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Protein
Submitted name:

Wilms tumor 1 protein

Gene

TWT1

Organism
Trachemys scripta (Red-eared slider turtle) (Pseudemys scripta)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • regulation of transcription, DNA-templated Source: InterPro
  • response to temperature stimulus Source: AgBase
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Wilms tumor 1 proteinImported
Gene namesi
Name:TWT1Imported
OrganismiTrachemys scripta (Red-eared slider turtle) (Pseudemys scripta)Imported
Taxonomic identifieri34903 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaTestudinesCryptodiraDurocryptodiraTestudinoideaEmydidaeTrachemys

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Structurei

3D structure databases

ProteinModelPortaliO42223.
SMRiO42223. Positions 260-379.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini265 – 29329C2H2-typeInterPro annotationAdd
BLAST
Domaini294 – 32330C2H2-typeInterPro annotationAdd
BLAST
Domaini324 – 35128C2H2-typeInterPro annotationAdd
BLAST
Domaini355 – 38430C2H2-typeInterPro annotationAdd
BLAST

Phylogenomic databases

HOVERGENiHBG006960.

Family and domain databases

Gene3Di3.30.160.60. 4 hits.
InterProiIPR017987. Wilms_tumour.
IPR000976. Wilms_tumour_N.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF02165. WT1. 2 hits.
PF00096. zf-C2H2. 1 hit.
[Graphical view]
PRINTSiPR00049. WILMSTUMOUR.
SMARTiSM00355. ZnF_C2H2. 4 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 3 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O42223-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGSDVRDLNA LLPSVSSLPG NSNCAMPVSS AAQWAPVLDF PPGASYGSLA
60 70 80 90 100
PHSFIKQEPS WNASDPHEEQ CLSAFTVHFS GQFTGTAGAC RYGPFGAPPP
110 120 130 140 150
TQAPSSQARM FPNGPYLPNC LESQQAIRNQ GYSTVAFDGT PSYGHTPSHH
160 170 180 190 200
AAQFTNHSFK HEDPISQQTS LGDQQYSVPP PVYGCHTPTD SCTGSQALLL
210 220 230 240 250
RTPYNSHATG YESDNHTGPM LYSCGAQYRI HTHGVFRGIQ DVRRVPGVAP
260 270 280 290 300
TIVRSASETN EKRPFMCAYP GCNKRYFKLS HLQMHRKHTG EKPYQCDFKD
310 320 330 340 350
CERRFSRSDQ LKRHQRRHTG VKPFQCKTCQ RKFSRSDHLK THTRTHTGKT
360 370 380 390
SEKPFSCRWP SCQKKFARSD ELVRHHNMHQ RNMTKLQLAL
Length:390
Mass (Da):43,620
Last modified:January 1, 1998 - v1
Checksum:i1C9987435BE927C2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF019779 mRNA. Translation: AAB70832.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF019779 mRNA. Translation: AAB70832.1.

3D structure databases

ProteinModelPortaliO42223.
SMRiO42223. Positions 260-379.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

HOVERGENiHBG006960.

Family and domain databases

Gene3Di3.30.160.60. 4 hits.
InterProiIPR017987. Wilms_tumour.
IPR000976. Wilms_tumour_N.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF02165. WT1. 2 hits.
PF00096. zf-C2H2. 1 hit.
[Graphical view]
PRINTSiPR00049. WILMSTUMOUR.
SMARTiSM00355. ZnF_C2H2. 4 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 3 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Expression of a new RNA-splice isoform of WT1 in developing kidney/gonadal complexes of the turtle, Trachemys scripta."
    Spotila L.D., Hall S.E.
    Submitted (AUG-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiO42223_TRASC
AccessioniPrimary (citable) accession number: O42223
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: December 9, 2015
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.