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Protein
Submitted name:

Olfactory receptor protein 13.4

Gene

or103-4

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

G-protein coupled receptorSAAS annotation, Receptor, Transducer

Keywords - Biological processi

OlfactionSAAS annotation, Sensory transduction

Names & Taxonomyi

Protein namesi
Submitted name:
Olfactory receptor protein 13.4Imported
Gene namesi
Name:or103-4Imported
Synonyms:or13.4Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-000329-12. or103-4.

Subcellular locationi

  • Cell membrane SAAS annotation; Multi-pass membrane protein SAAS annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei22 – 5029HelicalSequence analysisAdd
BLAST
Transmembranei57 – 7721HelicalSequence analysisAdd
BLAST
Transmembranei97 – 11923HelicalSequence analysisAdd
BLAST
Transmembranei140 – 16021HelicalSequence analysisAdd
BLAST
Transmembranei199 – 22426HelicalSequence analysisAdd
BLAST
Transmembranei244 – 26118HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membraneSAAS annotation, Membrane

PTM / Processingi

Proteomic databases

PaxDbiO42165.

Structurei

3D structure databases

ProteinModelPortaliO42165.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini40 – 291252G_PROTEIN_RECEP_F1_2InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the G-protein coupled receptor 1 family.SAAS annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiENOG410JC0P. Eukaryota.
ENOG410YCQX. LUCA.
HOGENOMiHOG000041363.
HOVERGENiHBG017625.

Family and domain databases

InterProiIPR000276. GPCR_Rhodpsn.
IPR017452. GPCR_Rhodpsn_7TM.
IPR000725. Olfact_rcpt.
[Graphical view]
PRINTSiPR00237. GPCRRHODOPSN.
PR00245. OLFACTORYR.
PROSITEiPS50262. G_PROTEIN_RECEP_F1_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O42165-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGNTSFVKDF FIVGFPGLQP HYYGLVSALL FFVYLFTLME NGVFFTLFVI
60 70 80 90 100
TKSLHRPVYY FVLNLVVCDV LFSTTMLPKI ISRYWFQDGT ISFLGCFVQM
110 120 130 140 150
FFVHYLGGVI SNVLAVMAID RYAAICYPLQ YHNIMTNRNI LILILGCWIL
160 170 180 190 200
SLAGPLMLVI RAYPLPYCAE NTIIHCYCEH VSVTTLACTD RSLYSIPALI
210 220 230 240 250
YALVLLMGSF AIIVFSYCSI FIAVMRISGS QGRMKTFSTC SPHLMIIALY
260 270 280 290 300
FIPKCFLYLF GNIGVKFSTD LRILINVMSN LLPPMINPLI YCLRTEEITK
310
ILKRPFQNKQ IGIPLQLL
Length:318
Mass (Da):36,235
Last modified:January 1, 1998 - v1
Checksum:iE75802B15F7C2ED7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF012747 mRNA. Translation: AAC60254.1.
RefSeqiNP_982294.1. NM_203469.1.
UniGeneiDr.75768.

Genome annotation databases

GeneIDi58121.
KEGGidre:58121.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF012747 mRNA. Translation: AAC60254.1.
RefSeqiNP_982294.1. NM_203469.1.
UniGeneiDr.75768.

3D structure databases

ProteinModelPortaliO42165.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

GPCRDBiSearch...

Proteomic databases

PaxDbiO42165.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi58121.
KEGGidre:58121.

Organism-specific databases

CTDi58121.
ZFINiZDB-GENE-000329-12. or103-4.

Phylogenomic databases

eggNOGiENOG410JC0P. Eukaryota.
ENOG410YCQX. LUCA.
HOGENOMiHOG000041363.
HOVERGENiHBG017625.

Family and domain databases

InterProiIPR000276. GPCR_Rhodpsn.
IPR017452. GPCR_Rhodpsn_7TM.
IPR000725. Olfact_rcpt.
[Graphical view]
PRINTSiPR00237. GPCRRHODOPSN.
PR00245. OLFACTORYR.
PROSITEiPS50262. G_PROTEIN_RECEP_F1_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Noncoordinate expression of odorant receptor genes tightly linked in the zebrafish genome."
    Barth A.L., Dugas J.C., Ngai J.
    Neuron 19:359-369(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: OlfactoryImported.

Entry informationi

Entry nameiO42165_DANRE
AccessioniPrimary (citable) accession number: O42165
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: June 8, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.