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Protein
Submitted name:

Chromo-helicase-DNA-binding on the Z chromosome protein

Gene

CHD-Z

Organism
Gallus gallus (Chicken)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

HelicaseImported, Hydrolase

Keywords - Ligandi

ATP-binding, DNA-bindingImported, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
Chromo-helicase-DNA-binding on the Z chromosome proteinImported
Gene namesi
Name:CHD-ZImported
OrganismiGallus gallus (Chicken)Imported
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus

Subcellular locationi

  • Nucleus SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiO42142.
PRIDEiO42142.

Interactioni

Protein-protein interaction databases

STRINGi9031.ENSGALP00000023555.

Structurei

3D structure databases

ProteinModelPortaliO42142.
SMRiO42142. Positions 267-440.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini269 – 36193ChromoInterPro annotationAdd
BLAST
Domaini386 – 44964ChromoInterPro annotationAdd
BLAST
Domaini490 – 660171Helicase ATP-bindingInterPro annotationAdd
BLAST
Domaini789 – 940152Helicase C-terminalInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili1401 – 147373Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG0384. Eukaryota.
COG0553. LUCA.
HOGENOMiHOG000207917.
HOVERGENiHBG005325.
KOiK11367.
PhylomeDBiO42142.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR000953. Chromo/shadow_dom.
IPR023780. Chromo_domain.
IPR016197. Chromodomain-like.
IPR023779. Chromodomain_CS.
IPR025260. DUF4208.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
[Graphical view]
PfamiPF00385. Chromo. 2 hits.
PF13907. DUF4208. 1 hit.
PF00271. Helicase_C. 1 hit.
PF00176. SNF2_N. 1 hit.
[Graphical view]
SMARTiSM00298. CHROMO. 2 hits.
SM00487. DEXDc. 1 hit.
SM01176. DUF4208. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF54160. SSF54160. 2 hits.
PROSITEiPS00598. CHROMO_1. 2 hits.
PS50013. CHROMO_2. 2 hits.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O42142-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNGHSDEESV RNSSGESSRS DDDSGSASGS GSGSSSGSSS DGSSSQSGSS
60 70 80 90 100
DSESGSESGS QSESESDTSR EKKQVQAKPP KADGSEFWKS SPSILAVQRS
110 120 130 140 150
AVLKKQQQQQ KAASSDSGSE EDSSSSEDSA DDSSSETKKK KHKDEDWQMS
160 170 180 190 200
GSGSVSGTGS DSESAEDGDK SSCEESESDY EPKNKVKSRK PPSRIKPKSG
210 220 230 240 250
KKSTGQKKRQ LDSSEEEEDD DEDYDKRGSR RQATVNVSYK EAEETKTDSD
260 270 280 290 300
DLLEVCGEDV PQTEEDEFET IEKFMDSRIG RKGATGASTT IYAVEADGDP
310 320 330 340 350
NAGFEKSKEL GEIQYLIKWK GWSHIHNTWE TEETLKQQNV KGMNKLDNYK
360 370 380 390 400
KKDQETKRWL KNASPEDVEY YNCQQELTDD LHKQYQIVER IIAHSNQKSA
410 420 430 440 450
AGYPDYYCKW QGLPYSECSW EDGALIAKKF QARIDEYFSR NQSKTTPFKD
460 470 480 490 500
CKVLKQRPRF VALKKQPSYI GGHESLELRD YQLNGLNWLA HSWCKGNSCI
510 520 530 540 550
LADEMGLGKT IQTISFLNYL FHEHQLYGPF LLRVPLSTLT SWQREIQTWA
560 570 580 590 600
PQMNAVVYLG DITSRNMIRT HEWMHPQTKR LKFNILLTTY EILLKDKSFL
610 620 630 640 650
GGLNWAFIGV DEAHRLKNDD SLLYRTLIDF KSNHRLLITG TPLQNSLKEL
660 670 680 690 700
WSLLHFIMPE KFSSWEDFEE EHGKGREYGY ASLHKELEPF LLRRVKKDVE
710 720 730 740 750
KSLPAKVEQI LRMEMSALQK QYYKWILTRN YKALSKGSKG STSGFLNIMM
760 770 780 790 800
ELKKCCNHCY LIKPPDDNEF YNKQEALQHL IRSSGKLILL DKLLIRLRER
810 820 830 840 850
GNRVLIFSQM VRMLDILAEY LKYRQFPFQR LDGSIKGELR KQALDHFNAE
860 870 880 890 900
GSEDFCFLLS TRAGGLGINL ASADTVVIFD SDWNPQNDLQ AQARAHRIGQ
910 920 930 940 950
KKQVNIYRLV TKGSVEEDIL ERAKKKMVLD HLVIQRMDTT GKTVLHTGST
960 970 980 990 1000
PSSSTPFNKE ELSAILKFGA EELFKEPEGE EQEPQEMDID EILKRAETRE
1010 1020 1030 1040 1050
NEPGPLTVGD ELLSQFKVAN FSNMDEDDIE LEPERNSRNW EEIIPESQRR
1060 1070 1080 1090 1100
RIEEEERQKE LEEIYMLPRM RNCAKQISFN GSEGRRSRSR RYSGSDSDSI
1110 1120 1130 1140 1150
TERKRPKKRG RPRTIPRENI KGFSDAEIRR FIKSYKKFGG PLERLDAVAR
1160 1170 1180 1190 1200
DAELVDKSET DLRRLGELVH NGCIKALKDN SSGQERAGGR LGKVKGPTFR
1210 1220 1230 1240 1250
ISGVQVNAKL VISHEEELAP LHKSIPSDPE ERKRYVIPCH TKAAHFDIDW
1260 1270 1280 1290 1300
GKEDDSNLLV GIYEYGYGSW EMIKMDPDLS LTQKILPDDP DKKPQAKQLQ
1310 1320 1330 1340 1350
TRADYLIKLL NKDLARKEAQ RLAGAGNSKR RKTRNKKNKM KASKIKEEIK
1360 1370 1380 1390 1400
SDSSPQPSEK SDEDDEEEDN KDEIVSVKHL HKKIKTEKEN EEKPEPDIGI
1410 1420 1430 1440 1450
KKEAEEKRET KEKENKRELK REKKEKEDKK ELKEKDNKEK RENKVKESTQ
1460 1470 1480 1490 1500
KEKEVKEEKV NEMKSENKEK SKKIPLLDTP VHITATSEPV PISEESEELH
1510 1520 1530 1540 1550
QKTFSVCKER MRPVKAALKQ LDRPEKGLSE REQLEHTRQC LIKIGDHITE
1560 1570 1580 1590 1600
CLKEYTNPEQ IKQWRKNLWI FVSKFTEFDA RKLHKLYKHA IKKRQESQQH
1610 1620 1630 1640 1650
NDQNISSNVN THVIRNPDVE RLKETTNHDD SSRDSYSSDR HLSQYHDHHK
1660 1670 1680 1690 1700
DRHQGDAYKK SDSRKRPYSA FSNGKDHRDW DHYKQDSRYY SDSKHRKLDD
1710 1720 1730 1740 1750
HRSRDHRSNL EGNLKDSRGH SDHRSHSDHR IHSDHRSTSE YSHHKSSRDY
1760 1770 1780 1790 1800
RYHSDWQMDH RASGSGPRSP LDQRSPYGSR SPLGHRSPFE HSSDHKSTPE

HTWSSRKT
Length:1,808
Mass (Da):208,401
Last modified:January 1, 1998 - v1
Checksum:i93A07FF7B401B5D8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF004397 mRNA. Translation: AAC60282.1.
RefSeqiNP_990272.1. NM_204941.1.
UniGeneiGga.4301.

Genome annotation databases

GeneIDi395783.
KEGGigga:395783.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF004397 mRNA. Translation: AAC60282.1.
RefSeqiNP_990272.1. NM_204941.1.
UniGeneiGga.4301.

3D structure databases

ProteinModelPortaliO42142.
SMRiO42142. Positions 267-440.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9031.ENSGALP00000023555.

Proteomic databases

PaxDbiO42142.
PRIDEiO42142.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi395783.
KEGGigga:395783.

Organism-specific databases

CTDi1105.

Phylogenomic databases

eggNOGiKOG0384. Eukaryota.
COG0553. LUCA.
HOGENOMiHOG000207917.
HOVERGENiHBG005325.
KOiK11367.
PhylomeDBiO42142.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR000953. Chromo/shadow_dom.
IPR023780. Chromo_domain.
IPR016197. Chromodomain-like.
IPR023779. Chromodomain_CS.
IPR025260. DUF4208.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
[Graphical view]
PfamiPF00385. Chromo. 2 hits.
PF13907. DUF4208. 1 hit.
PF00271. Helicase_C. 1 hit.
PF00176. SNF2_N. 1 hit.
[Graphical view]
SMARTiSM00298. CHROMO. 2 hits.
SM00487. DEXDc. 1 hit.
SM01176. DUF4208. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF54160. SSF54160. 2 hits.
PROSITEiPS00598. CHROMO_1. 2 hits.
PS50013. CHROMO_2. 2 hits.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO42142_CHICK
AccessioniPrimary (citable) accession number: O42142
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: July 6, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.