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Protein
Submitted name:

Me-Tam

Gene

Me-T

Organism
Oryzias latipes (Japanese rice fish) (Japanese killifish)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationSAAS annotation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Me-TamImported
Gene namesi
Name:Me-TImported
OrganismiOryzias latipes (Japanese rice fish) (Japanese killifish)Imported
Taxonomic identifieri8090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiNeoteleosteiAcanthomorphataOvalentariaAtherinomorphaeBeloniformesAdrianichthyidaeOryziinaeOryzias

Subcellular locationi

  • Nucleus SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi8090.ENSORLP00000017637.

Structurei

3D structure databases

ProteinModelPortaliO42100.
SMRiO42100. Positions 34-216.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains T-box DNA-binding domain.SAAS annotation

Phylogenomic databases

eggNOGiKOG3585. Eukaryota.
ENOG410XSTS. LUCA.
HOGENOMiHOG000063663.
HOVERGENiHBG004599.
KOiK10172.

Family and domain databases

Gene3Di2.60.40.820. 1 hit.
InterProiIPR008967. p53-like_TF_DNA-bd.
IPR002070. TF_Brachyury.
IPR001699. TF_T-box.
IPR018186. TF_T-box_CS.
[Graphical view]
PANTHERiPTHR11267. PTHR11267. 1 hit.
PfamiPF00907. T-box. 1 hit.
[Graphical view]
PRINTSiPR00938. BRACHYURY.
PR00937. TBOX.
SMARTiSM00425. TBOX. 1 hit.
[Graphical view]
SUPFAMiSSF49417. SSF49417. 1 hit.
PROSITEiPS01283. TBOX_1. 1 hit.
PS01264. TBOX_2. 1 hit.
PS50252. TBOX_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O42100-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSASNPDQRL EHLLSAVESE FQKGSEKGDA SERDIKLTLE DADLWNKFKE
60 70 80 90 100
LTNEMIVTKT GRRMFPVLRA SVSGLDPNAM YSVLLDFVAA DNNRWKYVNG
110 120 130 140 150
EWVPGGKPEP QSPSCVYIHP DSPNFGAHWM KAPVSFSKVK LSNKLNGGGQ
160 170 180 190 200
IMLNSLHKYE PRIHIVKVGG IQKMISSQSF PETQFIAVTA YQNEEITALK
210 220 230 240 250
IKHNPFAKAF LDAKERSDHK DVPEHSADSQ QPGYSQLGGW FLPSQSPICP
260 270 280 290 300
SSSPPQFSSS AGHSSGSYCE RYSGLRSHRA APYPSHYPHR SAGTNNYMES
310 320 330 340 350
SSGGLSTHDS WSALQIPNSP GMGTLSHSSN STPNSSQYPS LWSVAGSSLA
360 370 380 390 400
SSGSTSGSIS GGLTPQFLRG SSYTGLTSSL PVSSPSSMYD PNLSEVGDAQ
410
FENSIARLTA TWAPVAQSY
Length:419
Mass (Da):45,391
Last modified:January 1, 1998 - v1
Checksum:iA405BAD739E20FA1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001871 mRNA. Translation: BAA23581.1.
RefSeqiNP_001098127.1. NM_001104657.1.
UniGeneiOla.80.

Genome annotation databases

GeneIDi100049182.
KEGGiola:100049182.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001871 mRNA. Translation: BAA23581.1.
RefSeqiNP_001098127.1. NM_001104657.1.
UniGeneiOla.80.

3D structure databases

ProteinModelPortaliO42100.
SMRiO42100. Positions 34-216.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi8090.ENSORLP00000017637.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi100049182.
KEGGiola:100049182.

Organism-specific databases

CTDi100049182.

Phylogenomic databases

eggNOGiKOG3585. Eukaryota.
ENOG410XSTS. LUCA.
HOGENOMiHOG000063663.
HOVERGENiHBG004599.
KOiK10172.

Family and domain databases

Gene3Di2.60.40.820. 1 hit.
InterProiIPR008967. p53-like_TF_DNA-bd.
IPR002070. TF_Brachyury.
IPR001699. TF_T-box.
IPR018186. TF_T-box_CS.
[Graphical view]
PANTHERiPTHR11267. PTHR11267. 1 hit.
PfamiPF00907. T-box. 1 hit.
[Graphical view]
PRINTSiPR00938. BRACHYURY.
PR00937. TBOX.
SMARTiSM00425. TBOX. 1 hit.
[Graphical view]
SUPFAMiSSF49417. SSF49417. 1 hit.
PROSITEiPS01283. TBOX_1. 1 hit.
PS01264. TBOX_2. 1 hit.
PS50252. TBOX_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO42100_ORYLA
AccessioniPrimary (citable) accession number: O42100
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: May 11, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.