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Protein

Gag polyprotein

Gene

gag

Organism
Simian endogenous retrovirus
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Gag polyproteinSAAS annotation
Gene namesi
Name:gagImported
OrganismiSimian endogenous retrovirusImported
Taxonomic identifieri1048243 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeBetaretrovirus

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid proteinUniRule annotation, Virion

Structurei

3D structure databases

ProteinModelPortaliO41288.
SMRiO41288. Positions 1-100, 575-605.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini550 – 56314CCHC-typeInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili217 – 24428Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 2 hits.
InterProiIPR003322. B_retro_matrix.
IPR000721. Gag_p24.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF02337. Gag_p10. 1 hit.
PF00607. Gag_p24. 1 hit.
[Graphical view]
ProDomiPD004265. B_retro_matrix_N. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 2 hits.
PROSITEiPS50158. ZF_CCHC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O41288-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGQELSQHQI YVGQLKEALK IRGVKVKGND LFKFFDFVKD TCPWFPQEGT
60 70 80 90 100
IDIKRWRRVG DCFQDYYNTF GPEKIPVTAF SYWNLIRDLI DKKEADPQVM
110 120 130 140 150
AAVAQTEHIL KVSSRSNLAK PPQDTEEDLI SLESDHEEIK SPSVTDKEMP
160 170 180 190 200
HENKPKKYPI LQMLQKEEEI NKPNQSDINW DDLKEEAAKY HNPDLPPFTS
210 220 230 240 250
YPPPYNKTYN EASAPIVMAA IDPKEELKQK IAQLEEQIKL EELHQSLIIR
260 270 280 290 300
LQKLKTGNEK IPNSDAMEGS LRPPQRPGQH VPRGGLVASR RKENSSPKDV
310 320 330 340 350
FPVTETTDEQ GQAWRHHTGF DFTIIKELKT AASHYGATAP YTLAIVKSVA
360 370 380 390 400
NNWLTPTDWN TLVRAVLSGG DHLIWKSEFF ENCRDTTKKN QQAGNGWDFD
410 420 430 440 450
MLTGSGNYAN TRAQMQYDPG LFSQIQAAAT KAWRKLPVKG DPGASLTAVK
460 470 480 490 500
QGPNEPFSDF VHRLMTTAGR IFGNAETGVD YVKQLAYENA NPACQAAIRP
510 520 530 540 550
YRKKTDLTGY IRLCSDIGPS YQQGLAMTAA FSGQTVRDFL INKGKDKGGC
560 570 580 590 600
FRCGKRGHFA KDCHENQNKN PEAKIPGLCP RCKRGRHWAN ECKSKTDSQG
610 620 630 640 650
NPLSPRQGNG MRGQPQAPKQ AYGAVSFVPA SNSNTFQSLV EQPQEVQDWT

SVPPPTQY
Length:658
Mass (Da):73,985
Last modified:January 1, 1998 - v1
Checksum:iCCB36BEA7C38EEB5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U85505 Genomic DNA. Translation: AAC97563.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U85505 Genomic DNA. Translation: AAC97563.1.

3D structure databases

ProteinModelPortaliO41288.
SMRiO41288. Positions 1-100, 575-605.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 2 hits.
InterProiIPR003322. B_retro_matrix.
IPR000721. Gag_p24.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF02337. Gag_p10. 1 hit.
PF00607. Gag_p24. 1 hit.
[Graphical view]
ProDomiPD004265. B_retro_matrix_N. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 2 hits.
PROSITEiPS50158. ZF_CCHC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete nucleotide sequence of simian endogenous type D retrovirus with intact genome organization: evidence for ancestry to simian retrovirus and baboon endogenous virus."
    van der Kuyl A.C., Mang R., Dekker J.T., Goudsmit J.
    J. Virol. 71:3666-3676(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiO41288_MPMV
AccessioniPrimary (citable) accession number: O41288
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: February 17, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.