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Protein

Gag polyprotein

Gene

gag

Organism
Simian endogenous retrovirus
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Gag polyproteinSAAS annotation
Gene namesi
Name:gagImported
OrganismiSimian endogenous retrovirusImported
Taxonomic identifieri1048243 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeBetaretrovirus
Proteomesi
  • UP000114147 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Structurei

3D structure databases

ProteinModelPortaliO41288
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini550 – 563CCHC-typeInterPro annotationAdd BLAST14

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili217 – 244Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Family and domain databases

Gene3Di1.10.1200.30, 1 hit
1.10.150.490, 1 hit
1.10.375.10, 1 hit
InterProiView protein in InterPro
IPR003322 B_retro_matrix
IPR038124 B_retro_matrix_sf
IPR000721 Gag_p24
IPR008916 Retrov_capsid_C
IPR008919 Retrov_capsid_N
IPR010999 Retrovr_matrix
IPR001878 Znf_CCHC
IPR036875 Znf_CCHC_sf
PfamiView protein in Pfam
PF02337 Gag_p10, 1 hit
PF00607 Gag_p24, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD004265 B_retro_matrix_N, 1 hit
SMARTiView protein in SMART
SM00343 ZnF_C2HC, 2 hits
SUPFAMiSSF47836 SSF47836, 1 hit
SSF47943 SSF47943, 1 hit
SSF57756 SSF57756, 2 hits
PROSITEiView protein in PROSITE
PS50158 ZF_CCHC, 1 hit

Sequencei

Sequence statusi: Complete.

O41288-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGQELSQHQI YVGQLKEALK IRGVKVKGND LFKFFDFVKD TCPWFPQEGT
60 70 80 90 100
IDIKRWRRVG DCFQDYYNTF GPEKIPVTAF SYWNLIRDLI DKKEADPQVM
110 120 130 140 150
AAVAQTEHIL KVSSRSNLAK PPQDTEEDLI SLESDHEEIK SPSVTDKEMP
160 170 180 190 200
HENKPKKYPI LQMLQKEEEI NKPNQSDINW DDLKEEAAKY HNPDLPPFTS
210 220 230 240 250
YPPPYNKTYN EASAPIVMAA IDPKEELKQK IAQLEEQIKL EELHQSLIIR
260 270 280 290 300
LQKLKTGNEK IPNSDAMEGS LRPPQRPGQH VPRGGLVASR RKENSSPKDV
310 320 330 340 350
FPVTETTDEQ GQAWRHHTGF DFTIIKELKT AASHYGATAP YTLAIVKSVA
360 370 380 390 400
NNWLTPTDWN TLVRAVLSGG DHLIWKSEFF ENCRDTTKKN QQAGNGWDFD
410 420 430 440 450
MLTGSGNYAN TRAQMQYDPG LFSQIQAAAT KAWRKLPVKG DPGASLTAVK
460 470 480 490 500
QGPNEPFSDF VHRLMTTAGR IFGNAETGVD YVKQLAYENA NPACQAAIRP
510 520 530 540 550
YRKKTDLTGY IRLCSDIGPS YQQGLAMTAA FSGQTVRDFL INKGKDKGGC
560 570 580 590 600
FRCGKRGHFA KDCHENQNKN PEAKIPGLCP RCKRGRHWAN ECKSKTDSQG
610 620 630 640 650
NPLSPRQGNG MRGQPQAPKQ AYGAVSFVPA SNSNTFQSLV EQPQEVQDWT

SVPPPTQY
Length:658
Mass (Da):73,985
Last modified:January 1, 1998 - v1
Checksum:iCCB36BEA7C38EEB5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U85505 Genomic DNA Translation: AAC97563.1

Similar proteinsi

Entry informationi

Entry nameiO41288_MPMV
AccessioniPrimary (citable) accession number: O41288
Entry historyiIntegrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: March 28, 2018
This is version 95 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported
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Main funding by: National Institutes of Health