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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

A544R

Organism
Paramecium bursaria Chlorella virus 1 (PBCV-1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei32AMPCombined sources1
Binding sitei67AMPCombined sources1
Binding sitei98AMPCombined sources1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi25 – 28AMPCombined sources4
Nucleotide bindingi186 – 188AMPCombined sources3

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseImported
LigandNucleotide-bindingCombined sources

Enzyme and pathway databases

BRENDAi6.5.1.1. 8088.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:A544RImported
OrganismiParamecium bursaria Chlorella virus 1 (PBCV-1)Imported
Taxonomic identifieri10506 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stagePhycodnaviridaeChlorovirus
Virus hostiChlorella [TaxID: 114049]
Proteomesi
  • UP000000862 Componenti: Genome

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1P8LX-ray2.95A1-298[»]
2Q2TX-ray2.30A1-298[»]
2Q2UX-ray3.00A/B/C/D1-298[»]
ProteinModelPortaliO41026.
SMRiO41026.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO41026.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 177DNA_LIGASE_A3InterPro annotationAdd BLAST171
Domaini230 – 293DNA_ligase_OB_2InterPro annotationAdd BLAST64

Phylogenomic databases

KOiK10747.
OrthoDBiVOG090001TM.

Family and domain databases

InterProiView protein in InterPro
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
PfamiView protein in Pfam
PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiView protein in PROSITE
PS00333. DNA_LIGASE_A2. 1 hit.

Sequencei

Sequence statusi: Complete.

O41026-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAITKPLLAA TLENIEDVQF PCLATPKIDG IRSVKQTQML SRTFKPIRNS
60 70 80 90 100
VMNRLLTELL PEGSDGEISI EGATFQDTTS AVMTGHKMYN AKFSYYWFDY
110 120 130 140 150
VTDDPLKKYI DRVEDMKNYI TVHPHILEHA QVKIIPLIPV EINNITELLQ
160 170 180 190 200
YERDVLSKGF EGVMIRKPDG KYKFGRSTLK EGILLKMKQF KDAEATIISM
210 220 230 240 250
TALFKNTNTK TKDNFGYSKR STHKSGKVEE DVMGSIEVDY DGVVFSIGTG
260 270 280 290
FDADQRRDFW QNKESYIGKM VKFKYFEMGS KDCPRFPVFI GIRHEEDR
Length:298
Mass (Da):34,250
Last modified:January 1, 1998 - v1
Checksum:i01E5A8094FF558F8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JF411744 Genomic DNA. Translation: AAC96909.1.
PIRiT18046.
RefSeqiNP_048900.1. NC_000852.5.

Genome annotation databases

GeneIDi917798.
KEGGivg:917798.

Similar proteinsi

Entry informationi

Entry nameiO41026_PBCV1
AccessioniPrimary (citable) accession number: O41026
Entry historyiIntegrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: August 30, 2017
This is version 106 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported