A544R

Functionⁱ

Sites

Feature key	Position(s)	Length	Description
Binding siteⁱ	32 – 32	1	AMPCombined sources Automatic assertion inferred from combination of experimental and computational evidenceⁱ PDB:2Q2T
Binding siteⁱ	67 – 67	1	AMPCombined sources Automatic assertion inferred from combination of experimental and computational evidenceⁱ PDB:1P8L PDB:2Q2T
Binding siteⁱ	98 – 98	1	AMPCombined sources Automatic assertion inferred from combination of experimental and computational evidenceⁱ PDB:1P8L PDB:2Q2T

Regions

Feature key	Position(s)	Length	Description	Graphical view	Feature identifier	Actions
Nucleotide bindingⁱ	25 – 28	4	AMPCombined sources Automatic assertion inferred from combination of experimental and computational evidenceⁱ PDB:1P8L PDB:2Q2T
Nucleotide bindingⁱ	186 – 188	3	AMPCombined sources Automatic assertion inferred from combination of experimental and computational evidenceⁱ PDB:1P8L PDB:2Q2T

GO - Molecular functionⁱ

ATP binding Source: InterPro
DNA ligase (ATP) activity Source: InterPro

GO - Biological processⁱ

DNA ligation involved in DNA repair Source: InterPro
DNA recombination Source: InterPro

Complete GO annotation...

Keywords - Molecular functionⁱ

LigaseImported

Keywords - Ligandⁱ

Nucleotide-bindingCombined sources

Enzyme and pathway databases

BRENDAⁱ	6.5.1.1. 8088.

BRENDAⁱ

6.5.1.1. 8088.

Names & Taxonomyⁱ

Protein namesⁱ	Submitted name: ATP-dependent DNA ligaseImported Automatic assertion inferred from database entriesⁱ EMBL:AAC96909.1
Gene namesⁱ	Name:A544RImported Automatic assertion inferred from database entriesⁱ EMBL:AAC96909.1
Organismⁱ	Paramecium bursaria Chlorella virus 1 (PBCV-1)Imported Automatic assertion inferred from database entriesⁱ EMBL:AAC96909.1 Proteomes:UP000000862
Taxonomic identifierⁱ	10506 [NCBI]
Taxonomic lineageⁱ	Viruses › dsDNA viruses, no RNA stage › Phycodnaviridae › Chlorovirus
Virus hostⁱ	Chlorella [TaxID: 114049]
Proteomesⁱ	UP000000862 Componentⁱ: Genome

Structureⁱ

3D structure databases

Select the link destinations:
PDBeⁱ
RCSB PDBⁱ
PDBjⁱ

Links Updated

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1P8L	X-ray	2.95	A	1-298	[»]
2Q2T	X-ray	2.30	A	1-298	[»]
2Q2U	X-ray	3.00	A/B/C/D	1-298	[»]

ProteinModelPortalⁱ

O41026.

ModBaseⁱ

Search...

MobiDBⁱ

Search...

Miscellaneous databases

EvolutionaryTraceⁱ	O41026.

EvolutionaryTraceⁱ

O41026.

Family & Domainsⁱ

Domains and Repeats

Feature key	Position(s)	Length	Description	Graphical view	Feature identifier	Actions
Domainⁱ	7 – 177	171	DNA_LIGASE_A3InterPro annotation Automatic assertion inferred from signature matchⁱ Pfam:PF01068			Add BLAST
Domainⁱ	230 – 293	64	DNA_ligase_OB_2InterPro annotation Automatic assertion inferred from signature matchⁱ Pfam:PF14743			Add BLAST

Phylogenomic databases

KOⁱ	K10747.

KOⁱ

K10747.

Family and domain databases

Gene3Dⁱ	2.40.50.140. 1 hit.
InterProⁱ	IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR029319. DNA_ligase_OB. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfamⁱ	PF01068. DNA_ligase_A_M. 1 hit. PF14743. DNA_ligase_OB_2. 1 hit. [Graphical view]
SUPFAMⁱ	SSF50249. SSF50249. 1 hit.
PROSITEⁱ	PS00333. DNA_LIGASE_A2. 1 hit. [Graphical view]

Sequenceⁱ

Sequence statusⁱ: Complete.

O41026-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MAITKPLLAA TLENIEDVQF PCLATPKIDG IRSVKQTQML SRTFKPIRNS 
        60         70         80         90        100
VMNRLLTELL PEGSDGEISI EGATFQDTTS AVMTGHKMYN AKFSYYWFDY 
       110        120        130        140        150
VTDDPLKKYI DRVEDMKNYI TVHPHILEHA QVKIIPLIPV EINNITELLQ 
       160        170        180        190        200
YERDVLSKGF EGVMIRKPDG KYKFGRSTLK EGILLKMKQF KDAEATIISM 
       210        220        230        240        250
TALFKNTNTK TKDNFGYSKR STHKSGKVEE DVMGSIEVDY DGVVFSIGTG 
       260        270        280        290 
FDADQRRDFW QNKESYIGKM VKFKYFEMGS KDCPRFPVFI GIRHEEDR

Length:298

Mass (Da):34,250

Last modified:January 1, 1998 - v1

Checksum:ⁱ01E5A8094FF558F8

GO

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	JF411744 Genomic DNA. Translation: AAC96909.1.
PIRⁱ	T18046.
RefSeqⁱ	NP_048900.1. NC_000852.5.

Genome annotation databases

GeneIDⁱ	917798.
KEGGⁱ	vg:917798.

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	JF411744 Genomic DNA. Translation: AAC96909.1.
PIRⁱ	T18046.
RefSeqⁱ	NP_048900.1. NC_000852.5.

3D structure databases

Select the link destinations:
PDBeⁱ
RCSB PDBⁱ
PDBjⁱ

Links Updated

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1P8L	X-ray	2.95	A	1-298	[»]
2Q2T	X-ray	2.30	A	1-298	[»]
2Q2U	X-ray	3.00	A/B/C/D	1-298	[»]

ProteinModelPortalⁱ

O41026.

ModBaseⁱ

Search...

MobiDBⁱ

Search...

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

GeneIDⁱ	917798.
KEGGⁱ	vg:917798.

Phylogenomic databases

KOⁱ	K10747.

KOⁱ

K10747.

Enzyme and pathway databases

BRENDAⁱ	6.5.1.1. 8088.

BRENDAⁱ

6.5.1.1. 8088.

Miscellaneous databases

EvolutionaryTraceⁱ	O41026.

EvolutionaryTraceⁱ

O41026.

Family and domain databases

Gene3Dⁱ	2.40.50.140. 1 hit.
InterProⁱ	IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR029319. DNA_ligase_OB. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfamⁱ	PF01068. DNA_ligase_A_M. 1 hit. PF14743. DNA_ligase_OB_2. 1 hit. [Graphical view]
SUPFAMⁱ	SSF50249. SSF50249. 1 hit.
PROSITEⁱ	PS00333. DNA_LIGASE_A2. 1 hit. [Graphical view]
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ

O41026_PBCV1

Accessionⁱ

Primary (citable) accession number: O41026

Entry historyⁱ

Integrated into UniProtKB/TrEMBL:	January 1, 1998
Last sequence update:	January 1, 1998
Last modified:	April 13, 2016
This is version 99 of the entry and version 1 of the sequence. [Complete history]

Entry statusⁱ

Unreviewed (UniProtKB/TrEMBL)

Miscellaneousⁱ

Keywords - Technical termⁱ

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsⁱ

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:

100%	UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%	UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%	UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

UniProtKB - O41026 (O41026_PBCV1)

UniProt

O41026 - O41026_PBCV1

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ATP-dependent DNA ligase

Select a section on the left to see content.

Functionⁱ

Sites

Regions

GO - Molecular functionⁱ

GO - Biological processⁱ

Keywords - Molecular functionⁱ

Keywords - Ligandⁱ

Enzyme and pathway databases

Names & Taxonomyⁱ

Structureⁱ

3D structure databases

Miscellaneous databases

Family & Domainsⁱ

Domains and Repeats

Phylogenomic databases

Family and domain databases

Sequenceⁱ

Sequence databases

Genome annotation databases

Cross-referencesⁱ

Sequence databases

3D structure databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Enzyme and pathway databases

Miscellaneous databases

Family and domain databases

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ

Similar proteinsⁱ

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - O41026 (O41026_PBCV1)

UniProt

O41026 - O41026_PBCV1

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ATP-dependent DNA ligase

A544R

Select a section on the left to see content.

<p>Provides any useful information about the protein, mostly biological knowledge.</p><p><a href='../manual/function_section' target='_top'>More...</a></p>Functioni

Sites

Regions

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:</p><p><a href='../manual/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:</p><p><a href='../manual/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Enzyme and pathway databases

<p>Provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.</p><p><a href='../manual/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>Provides information on the tertiary and secondary structure of a protein.</p><p><a href='../manual/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Miscellaneous databases

<p>Provides information on sequence similarities with other proteins and the domain(s) present in a protein.</p><p><a href='../manual/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Phylogenomic databases

Family and domain databases

<p>Displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including length and molecular weight.</p><p><a href='../manual/sequences_section' target='_top'>More...</a></p>Sequencei

Sequence databases

Genome annotation databases

<p>Is used to point to information related to entries and found in data collections other than UniProtKB.</p><p><a href='../manual/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Enzyme and pathway databases

Miscellaneous databases

Family and domain databases

<p>Provides general information on the entry.</p><p><a href='../manual/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>Contains any relevant information that doesn’t fit in any other defined sections</p><p><a href='../manual/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Structureⁱ

Family & Domainsⁱ

Sequenceⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ