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Protein
Submitted name:

Gag protein

Gene

gag

Organism
Human immunodeficiency virus 1
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Gag proteinImported
Gene namesi
Name:gagImported
OrganismiHuman immunodeficiency virus 1Imported
Taxonomic identifieri11676 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeLentivirusPrimate lentivirus group
Virus hostiHomo sapiens (Human) [TaxID: 9606]

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Structurei

3D structure databases

ProteinModelPortaliO40549.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 116Gag_p17InterPro annotationAdd BLAST116

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili71 – 105Sequence analysisAdd BLAST35

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Gene3Di1.10.150.90. 1 hit.
1.10.375.10. 1 hit.
InterProiIPR000071. Lentvrl_matrix_N.
IPR012344. Matrix_HIV/RSV.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
[Graphical view]
PfamiPF00540. Gag_p17. 1 hit.
[Graphical view]
PRINTSiPR00234. HIV1MATRIX.
SUPFAMiSSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.

Sequencei

Sequence statusi: Fragment.

O40549-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
EKIRLRPGGK KKYRLKHLVW ASRELERFAV NSGLLETSEG CRQILGQLQP
60 70 80 90 100
ALQTGSEDLR SLYNTVATLY CVHQQIDIRD TKEALEKVEE EQNNSKKKAQ
110 120 130 140
QAAADTGNSS QVSQNYPIVQ NMQGQMVHQA ISPRTLNAWV KVVEG
Length:145
Mass (Da):16,347
Last modified:January 1, 1998 - v1
Checksum:iE9F2898D6B270718
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1
Non-terminal residuei145Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z97116 Genomic DNA. Translation: CAB09846.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z97116 Genomic DNA. Translation: CAB09846.1.

3D structure databases

ProteinModelPortaliO40549.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.150.90. 1 hit.
1.10.375.10. 1 hit.
InterProiIPR000071. Lentvrl_matrix_N.
IPR012344. Matrix_HIV/RSV.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
[Graphical view]
PfamiPF00540. Gag_p17. 1 hit.
[Graphical view]
PRINTSiPR00234. HIV1MATRIX.
SUPFAMiSSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiO40549_9HIV1
AccessioniPrimary (citable) accession number: O40549
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: December 9, 2015
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.