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Protein
Submitted name:

Gag protein

Gene

gag

Organism
Human immunodeficiency virus 1
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Gag proteinImported
Gene namesi
Name:gagImported
OrganismiHuman immunodeficiency virus 1Imported
Taxonomic identifieri11676 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeLentivirusPrimate lentivirus group
Virus hostiHomo sapiens (Human) [TaxID: 9606]

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Structurei

3D structure databases

ProteinModelPortaliO40547.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 116116Gag_p17InterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili71 – 10535Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Gene3Di1.10.150.90. 1 hit.
1.10.375.10. 1 hit.
InterProiIPR000071. Lentvrl_matrix_N.
IPR012344. Matrix_HIV/RSV.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
[Graphical view]
PfamiPF00540. Gag_p17. 1 hit.
[Graphical view]
PRINTSiPR00234. HIV1MATRIX.
SUPFAMiSSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.

Sequencei

Sequence statusi: Fragment.

O40547-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
EKIRLRPGGE KKYRLKHLVW ASRELERFAV NSGLLETSEG CRQILGQLQP
60 70 80 90 100
ALQTGSEELR SLYNTVATLY CVHQQIDIRD TKEALEKVEE EQNKSKKKAQ
110 120 130 140
QAAADTGDSC QVSQNYPIVQ NMQGQMVHQA ISPRTLNAWV KVVEG
Length:145
Mass (Da):16,393
Last modified:January 1, 1998 - v1
Checksum:i0C5E2F800628624C
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported
Non-terminal residuei145 – 1451Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z97113 Genomic DNA. Translation: CAB09843.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z97113 Genomic DNA. Translation: CAB09843.1.

3D structure databases

ProteinModelPortaliO40547.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.150.90. 1 hit.
1.10.375.10. 1 hit.
InterProiIPR000071. Lentvrl_matrix_N.
IPR012344. Matrix_HIV/RSV.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
[Graphical view]
PfamiPF00540. Gag_p17. 1 hit.
[Graphical view]
PRINTSiPR00234. HIV1MATRIX.
SUPFAMiSSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Lack of genetic variation within the V3 loop of Human immunodeficiency virus type I (HIV-I) during transmission indicates an envelope mediated selection."
    Machuca R., Schoenning K., Hansen J.E.S., Bruun L., Fomsgaard A., Nielsen C.
    Submitted (JUN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiO40547_9HIV1
AccessioniPrimary (citable) accession number: O40547
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: December 9, 2015
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.