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O39930 (O39930_9HEPC) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 58. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:NS5b EMBL CAB10747.1
OrganismHepatitis C virus EMBL CAB10747.1
Taxonomic identifier11103 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageFlaviviridaeHepacivirus

Protein attributes

Sequence length591 AA.
Sequence statusFragment.
Protein existencePredicted

General annotation (Comments)

Catalytic activity

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). SAAS SAAS002166

Sequence similarities

Contains RdRp catalytic domain. SAAS SAAS002166

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL CAB10747.1

Sequences

Sequence LengthMass (Da)Tools
O39930 [UniParc].

Last modified January 1, 1998. Version 1.
Checksum: 6FA9C2F970260349

FASTA59165,754
        10         20         30         40         50         60 
SMSYTWTGAL ITPCAAEESK LPINALSNSL LRHHNMVYAT TSRSASLRQK KVTFDRLQVL 

        70         80         90        100        110        120 
DDHYRDVLKE MKAKASTVKA KLLSVEEACK LTPPHSAKSK FGYGAKDVRN LSSKAVNHIR 

       130        140        150        160        170        180 
SVWKDLLEDT ETPIDTTIMA KNEVFCVQPE KGGRKPARLI VFPDLGVRVC EKMALYDVVS 

       190        200        210        220        230        240 
TLPQAVMGSS YGFQYSPGQR VEFLVNTWKS KKCPMGFSYD TRCFDSTVTE NDIRVEESIY 

       250        260        270        280        290        300 
QCCDLAPEAR QAIRSLTERL YIGGPLTNSK GQNCGYRRCR ASGVLTTSCG NTLTCYLKAS 

       310        320        330        340        350        360 
AACRAAKLQD CTMLVCGDDL VVICESAGTQ EDAASLRAFT EAMTRYSAPP GDPPQPEYDL 

       370        380        390        400        410        420 
ELITSCSSNV SVAHDASGKR VYYLTRDPTT PLARAAWETA RHTPVNSWLG NIIMYAPTLW 

       430        440        450        460        470        480 
ARMILMTHFF SILLAQEQLE KALDCQIYGA CYSIEPLDLP QIIQRLHGLS AFSLHSYSPG 

       490        500        510        520        530        540 
EINRVASCLR KLGVPPLRVW RHRARSVRAR LLSQGGRAAT CGKYLFNWAV RTKLKLTPIP 

       550        560        570        580        590 
AASQLDLSSW FVAGYSGGDI YHSLSRARPR WFMWCLLLLS VGVGIYLLPN R 

« Hide

References

[1]"Biochemical properties of hepatitis C virus NS5B RNA-dependent RNA polymerase and identification of amino acid sequence motifs essential for enzymatic activity."
Lohmann V., Korner F., Herian U., Bartenschlager R.
J. Virol. 71:8416-8428(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
Z97730 Genomic RNA. Translation: CAB10747.1.

3D structure databases

ProteinModelPortalO39930.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

euHCVdbZ97730.

Family and domain databases

InterProIPR007094. RNA-dir_pol_PSvirus.
IPR002166. RNA_pol_HCV.
[Graphical view]
PfamPF00998. RdRP_3. 1 hit.
[Graphical view]
PROSITEPS50507. RDRP_SSRNA_POS. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceO39930.

Entry information

Entry nameO39930_9HEPC
AccessionPrimary (citable) accession number: O39930
Entry history
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: April 16, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)