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O35972

- RM23_MOUSE

UniProt

O35972 - RM23_MOUSE

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Protein

39S ribosomal protein L23, mitochondrial

Gene

Mrpl23

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. nucleotide binding Source: InterPro
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_270125. Mitochondrial translation elongation.
REACT_270158. Mitochondrial translation termination.
REACT_271096. Mitochondrial translation initiation.

Names & Taxonomyi

Protein namesi
Recommended name:
39S ribosomal protein L23, mitochondrial
Short name:
L23mt
Short name:
MRP-L23
Alternative name(s):
L23 mitochondrial-related protein
Gene namesi
Name:Mrpl23
Synonyms:L23mrp
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 7

Organism-specific databases

MGIiMGI:1196612. Mrpl23.

Subcellular locationi

GO - Cellular componenti

  1. mitochondrion Source: MGI
  2. ribosome Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14614639S ribosomal protein L23, mitochondrialPRO_0000129485Add
BLAST

Proteomic databases

MaxQBiO35972.
PaxDbiO35972.
PRIDEiO35972.

PTM databases

PhosphoSiteiO35972.

Expressioni

Gene expression databases

BgeeiO35972.
CleanExiMM_MRPL23.
GenevestigatoriO35972.

Interactioni

Protein-protein interaction databases

BioGridi202972. 7 interactions.

Structurei

3D structure databases

ProteinModelPortaliO35972.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L23P family.Curated

Phylogenomic databases

eggNOGiNOG309821.
GeneTreeiENSGT00390000007739.
HOGENOMiHOG000231896.
HOVERGENiHBG052914.
InParanoidiO35972.
KOiK02892.
OMAiRVFLPNF.
OrthoDBiEOG7BGHNC.
PhylomeDBiO35972.
TreeFamiTF105852.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamiPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMiSSF54189. SSF54189. 1 hit.

Sequencei

Sequence statusi: Complete.

O35972-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MARNVLYPLY QLGGPQLRVF RTNFFIQLVR PGTAQPEDTV QFRIPMEMTR
60 70 80 90 100
VDLRNYLEQI YNVPVAAVRT RVQHGSNRRR DHKNVRIKKP DYKVAYVQLA
110 120 130 140
HGQTFTFPDL FPEKDPRSPE PLEEELPQQR QSSDLRCPGI PSWFGL
Length:146
Mass (Da):17,122
Last modified:January 1, 1998 - v1
Checksum:i0116ADE56C9B1553
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U84902 mRNA. Translation: AAC53392.1.
U84903 Genomic DNA. Translation: AAC53393.1.
AB049646 mRNA. Translation: BAB40851.1.
AK086805 mRNA. Translation: BAC39746.1.
BC081460 mRNA. Translation: AAH81460.1.
U71209 Genomic DNA. Translation: AAB70459.1.
CCDSiCCDS22032.1.
RefSeqiNP_035418.1. NM_011288.1.
UniGeneiMm.12144.

Genome annotation databases

EnsembliENSMUST00000038675; ENSMUSP00000039784; ENSMUSG00000037772.
GeneIDi19935.
KEGGimmu:19935.
UCSCiuc009kny.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U84902 mRNA. Translation: AAC53392.1 .
U84903 Genomic DNA. Translation: AAC53393.1 .
AB049646 mRNA. Translation: BAB40851.1 .
AK086805 mRNA. Translation: BAC39746.1 .
BC081460 mRNA. Translation: AAH81460.1 .
U71209 Genomic DNA. Translation: AAB70459.1 .
CCDSi CCDS22032.1.
RefSeqi NP_035418.1. NM_011288.1.
UniGenei Mm.12144.

3D structure databases

ProteinModelPortali O35972.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 202972. 7 interactions.

PTM databases

PhosphoSitei O35972.

Proteomic databases

MaxQBi O35972.
PaxDbi O35972.
PRIDEi O35972.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000038675 ; ENSMUSP00000039784 ; ENSMUSG00000037772 .
GeneIDi 19935.
KEGGi mmu:19935.
UCSCi uc009kny.1. mouse.

Organism-specific databases

CTDi 6150.
MGIi MGI:1196612. Mrpl23.

Phylogenomic databases

eggNOGi NOG309821.
GeneTreei ENSGT00390000007739.
HOGENOMi HOG000231896.
HOVERGENi HBG052914.
InParanoidi O35972.
KOi K02892.
OMAi RVFLPNF.
OrthoDBi EOG7BGHNC.
PhylomeDBi O35972.
TreeFami TF105852.

Enzyme and pathway databases

Reactomei REACT_270125. Mitochondrial translation elongation.
REACT_270158. Mitochondrial translation termination.
REACT_271096. Mitochondrial translation initiation.

Miscellaneous databases

NextBioi 297449.
PROi O35972.
SOURCEi Search...

Gene expression databases

Bgeei O35972.
CleanExi MM_MRPL23.
Genevestigatori O35972.

Family and domain databases

Gene3Di 3.30.70.330. 1 hit.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view ]
Pfami PF00276. Ribosomal_L23. 1 hit.
[Graphical view ]
SUPFAMi SSF54189. SSF54189. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Structure and expression of the mouse L23mrp gene downstream of the imprinted H19 gene: biallelic expression and lack of interaction with the H19 enhancers."
    Zubair M., Hilton K., Saam J.R., Surani M.A., Tilghman S.M., Sasaki H.
    Genomics 45:290-296(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
    Strain: 129/SvJ.
    Tissue: Liver.
  2. "Structural compensation for the deficit of rRNA with proteins in the mammalian mitochondrial ribosome. Systematic analysis of protein components of the large ribosomal subunit from mammalian mitochondria."
    Suzuki T., Terasaki M., Takemoto-Hori C., Hanada T., Ueda T., Wada A., Watanabe K.
    J. Biol. Chem. 276:21724-21736(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  3. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Lung.
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6.
    Tissue: Brain.
  5. "Matrix-attachment regions in the mouse chromosome 7F imprinted domain."
    Greally J.M., Guinness M.E., McGrath J., Zemel S.
    Mamm. Genome 8:805-810(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 8-44.
    Strain: C57BL/6.

Entry informationi

Entry nameiRM23_MOUSE
AccessioniPrimary (citable) accession number: O35972
Secondary accession number(s): Q78E46
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 5, 2005
Last sequence update: January 1, 1998
Last modified: November 26, 2014
This is version 115 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3