O35375 (NRP2_MOUSE) Reviewed, UniProtKB/Swiss-Prot
Last modified
December 14, 2011.
Version 102.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Neuropilin-2 Alternative name(s): Vascular endothelial cell growth factor 165 receptor 2 | ||
| Gene names |
| ||
| Organism | Mus musculus (Mouse) | ||
| Taxonomic identifier | 10090 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus |
Protein attributes
| Sequence length | 931 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at transcript level |
General annotation (Comments)
| Function | High affinity receptor for semaphorins 3C, 3F, VEGF-165 and VEGF-145 isoforms of VEGF, and the PLGF-2 isoform of PGF. |
| Subunit structure | Heterodimer with NRP1. Binds PLXNB1 By similarity. |
| Subcellular location | |
| Tissue specificity | Expressed in developing CNS, PNS and in some nonneural tissues including limb buds, developing bones, muscles, intestinal epithelium, kidney, lung and submandibular gland. |
| Developmental stage | The expression pattern is very dynamic and is developmentally regulated. |
| Domain | The tandem CUB domains mediate binding to semaphorin, while the tandem F5/8 domains are responsible for heparin and VEGF binding By similarity. |
| Sequence similarities | Belongs to the neuropilin family. Contains 2 CUB domains. Contains 2 F5/8 type C domains. Contains 1 MAM domain. |
Ontologies
Alternative products
| This entry describes 6 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform A22 (identifier: O35375-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform A0 (identifier: O35375-2) The sequence of this isoform differs from the canonical sequence as follows: 809-830: Missing. | ||||||
| Isoform A5 (identifier: O35375-3) The sequence of this isoform differs from the canonical sequence as follows: 814-830: Missing. | ||||||
| Isoform A17 (identifier: O35375-4) The sequence of this isoform differs from the canonical sequence as follows: 809-813: Missing. | ||||||
| Isoform B0 (identifier: O35375-5) The sequence of this isoform differs from the canonical sequence as follows: 810-931: EDFKVDIPET...INHQKCCSEA → GTLPPGTEPT...KLEQERGSHC | ||||||
| Isoform B5 (identifier: O35375-6) The sequence of this isoform differs from the canonical sequence as follows: 814-931: VDIPETHGGE...INHQKCCSEA → GGTLPPGTEP...KLEQERGSHC |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 20 | 20 | Potential | ||||||||
| Chain | 21 – 931 | 911 | Neuropilin-2 | PRO_0000021864 | |||||||
Regions | |||||||||||
| Topological domain | 21 – 864 | 844 | Extracellular Potential | ||||||||
| Transmembrane | 865 – 889 | 25 | Helical; Potential | ||||||||
| Topological domain | 890 – 931 | 42 | Cytoplasmic Potential | ||||||||
| Domain | 28 – 142 | 115 | CUB 1 | ||||||||
| Domain | 149 – 267 | 119 | CUB 2 | ||||||||
| Domain | 277 – 427 | 151 | F5/8 type C 1 | ||||||||
| Domain | 434 – 592 | 159 | F5/8 type C 2 | ||||||||
| Domain | 642 – 802 | 161 | MAM | ||||||||
| Compositional bias | 838 – 845 | 8 | Poly-Ser | ||||||||
Sites | |||||||||||
| Metal binding | 197 | 1 | Calcium By similarity | ||||||||
| Metal binding | 211 | 1 | Calcium By similarity | ||||||||
| Metal binding | 252 | 1 | Calcium By similarity | ||||||||
Amino acid modifications | |||||||||||
| Glycosylation | 152 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 157 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 629 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 839 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Disulfide bond | 28 ↔ 55 | By similarity | |||||||||
| Disulfide bond | 83 ↔ 105 | By similarity | |||||||||
| Disulfide bond | 149 ↔ 175 | By similarity | |||||||||
| Disulfide bond | 208 ↔ 230 | By similarity | |||||||||
| Disulfide bond | 277 ↔ 427 | By similarity | |||||||||
| Disulfide bond | 434 ↔ 592 | By similarity | |||||||||
Natural variations | |||||||||||
| Alternative sequence | 809 – 830 | 22 | Missing in isoform A0. | VSP_004344 | |||||||
| Alternative sequence | 809 – 813 | 5 | Missing in isoform A17. | VSP_004343 | |||||||
| Alternative sequence | 810 – 931 | 122 | EDFKV…CCSEA → GTLPPGTEPTVDTVPVQPIP AYWYYVMAAGGAVLVLASVV LALVLHYHRFRYAAKKTDHS ITYKTSHYTNGAPLAVEPTL TIKLEQERGSHC in isoform B0. | VSP_004346 | |||||||
| Alternative sequence | 814 – 931 | 118 | VDIPE…CCSEA → GGTLPPGTEPTVDTVPVQPI PAYWYYVMAAGGAVLVLASV VLALVLHYHRFRYAAKKTDH SITYKTSHYTNGAPLAVEPT LTIKLEQERGSHC in isoform B5. | VSP_004347 | |||||||
| Alternative sequence | 814 – 830 | 17 | Missing in isoform A5. | VSP_004345 | |||||||
Experimental info | |||||||||||
| Sequence conflict | 32 | 1 | L → P in AAC53377. Ref.1 | ||||||||
| Sequence conflict | 32 | 1 | L → P in AAC53378. Ref.1 | ||||||||
| Sequence conflict | 32 | 1 | L → P in AAC53379. Ref.1 | ||||||||
| Sequence conflict | 32 | 1 | L → P in AAC53380. Ref.1 | ||||||||
| Sequence conflict | 32 | 1 | L → P in AAC53381. Ref.1 | ||||||||
| Sequence conflict | 32 | 1 | L → P in AAC53382. Ref.1 | ||||||||
| Sequence conflict | 786 | 1 | I → G in AAC53377. Ref.1 | ||||||||
| Sequence conflict | 786 | 1 | I → G in AAC53378. Ref.1 | ||||||||
| Sequence conflict | 786 | 1 | I → G in AAC53382. Ref.1 | ||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Neuropilin-2, a novel member of the neuropilin family, is a high affinity receptor for the semaphorins Sema E and Sema IV but not Sema III." Chen H., Chedotal A., He Z.-G., Goodman C.S., Tessier-Lavigne M. Neuron 19:547-559(1997) [PubMed: 9331348] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS A0; A17; A22; A5; B0 AND B5). Strain: BALB/c. |
| [2] | "Lineage-specific biology revealed by a finished genome assembly of the mouse." Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. Ponting C.P.PLoS Biol. 7:E1000112-E1000112(2009) [PubMed: 19468303] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF022856 mRNA. Translation: AAC53379.1. AF022854 mRNA. Translation: AAC53377.1. AF022855 mRNA. Translation: AAC53378.1. AF022857 mRNA. Translation: AAC53380.1. AF022858 mRNA. Translation: AAC53381.1. AF022861 mRNA. Translation: AAC53382.1. AL671560, AL645727 Genomic DNA. Translation: CAI24156.1. AL645727, AL671560 Genomic DNA. Translation: CAI24511.1. |
| IPI | IPI00129911. IPI00227582. IPI00227583. IPI00227584. IPI00755777. IPI00876020. |
| RefSeq | NP_001070871.1. NM_001077403.1. |
| UniGene | Mm.266341. |
3D structure databases | |
| ProteinModelPortal | O35375. |
| SMR | O35375. Positions 26-595. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | O35375. |
Proteomic databases | |
| PRIDE | O35375. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENSMUST00000027112; ENSMUSP00000027112; ENSMUSG00000025969. ENSMUST00000063594; ENSMUSP00000069379; ENSMUSG00000025969. ENSMUST00000075144; ENSMUSP00000074642; ENSMUSG00000025969. ENSMUST00000102822; ENSMUSP00000099886; ENSMUSG00000025969. ENSMUST00000114155; ENSMUSP00000109792; ENSMUSG00000025969. ENSMUST00000114157; ENSMUSP00000109794; ENSMUSG00000025969. |
| GeneID | 18187. |
| KEGG | mmu:18187. |
Organism-specific databases | |
| CTD | 8828. |
| MGI | MGI:1100492. Nrp2. |
Phylogenomic databases | |
| eggNOG | roNOG04879. |
| HOGENOM | HBG714573. |
| HOVERGEN | HBG000502. |
| InParanoid | O35375. |
Enzyme and pathway databases | |
| Reactome | REACT_115492. Developmental Biology. |
Gene expression databases | |
| ArrayExpress | O35375. |
| Bgee | O35375. |
| CleanEx | MM_NRP2. |
| Genevestigator | O35375. |
| GermOnline | ENSMUSG00000025969. Mus musculus. |
Family and domain databases | |
| InterPro | IPR000421. Coagulation_fac_5/8-C_type_dom. IPR008985. ConA-like_lec_gl. IPR000859. CUB. IPR008979. Galactose-bd-like. IPR000998. MAM_dom. IPR014648. Neuropilin. IPR022579. Neuropilin1_C. [Graphical view] |
| Gene3D | G3DSA:2.60.120.290. CUB. 2 hits. |
| KO | K06819. |
| Pfam | PF00431. CUB. 2 hits. PF11980. DUF3481. 1 hit. PF00754. F5_F8_type_C. 2 hits. PF00629. MAM. 1 hit. [Graphical view] |
| PIRSF | PIRSF036960. Neuropilin. 1 hit. |
| PRINTS | PR00020. MAMDOMAIN. |
| SMART | SM00042. CUB. 2 hits. SM00231. FA58C. 2 hits. SM00137. MAM. 1 hit. [Graphical view] |
| SUPFAM | SSF49899. ConA_like_lec_gl. 1 hit. SSF49854. CUB. 2 hits. SSF49785. Gal_bind_like. 2 hits. |
| PROSITE | PS01180. CUB. 2 hits. PS01285. FA58C_1. 2 hits. PS01286. FA58C_2. 2 hits. PS50022. FA58C_3. 2 hits. PS50060. MAM_2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| SOURCE | Search... |
Entry information
| Entry name | NRP2_MOUSE | ||||||||
| Accession | Primary (citable) accession number: O35375 Secondary accession number(s): B1AT44 O35378 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
Relevant documents
| MGD cross-references Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

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