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O35375 (NRP2_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 102. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Neuropilin-2
Alternative name(s):
Vascular endothelial cell growth factor 165 receptor 2
Gene names
Name:Nrp2
OrganismMus musculus (Mouse)
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length931 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

High affinity receptor for semaphorins 3C, 3F, VEGF-165 and VEGF-145 isoforms of VEGF, and the PLGF-2 isoform of PGF.

Subunit structure

Heterodimer with NRP1. Binds PLXNB1 By similarity.

Subcellular location

Membrane; Single-pass type I membrane protein.

Tissue specificity

Expressed in developing CNS, PNS and in some nonneural tissues including limb buds, developing bones, muscles, intestinal epithelium, kidney, lung and submandibular gland.

Developmental stage

The expression pattern is very dynamic and is developmentally regulated.

Domain

The tandem CUB domains mediate binding to semaphorin, while the tandem F5/8 domains are responsible for heparin and VEGF binding By similarity.

Sequence similarities

Belongs to the neuropilin family.

Contains 2 CUB domains.

Contains 2 F5/8 type C domains.

Contains 1 MAM domain.

Alternative products

This entry describes 6 isoforms produced by alternative splicing. [Align] [Select]
Isoform A22 (identifier: O35375-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform A0 (identifier: O35375-2)

The sequence of this isoform differs from the canonical sequence as follows:
     809-830: Missing.
Isoform A5 (identifier: O35375-3)

The sequence of this isoform differs from the canonical sequence as follows:
     814-830: Missing.
Isoform A17 (identifier: O35375-4)

The sequence of this isoform differs from the canonical sequence as follows:
     809-813: Missing.
Isoform B0 (identifier: O35375-5)

The sequence of this isoform differs from the canonical sequence as follows:
     810-931: EDFKVDIPET...INHQKCCSEA → GTLPPGTEPT...KLEQERGSHC
Isoform B5 (identifier: O35375-6)

The sequence of this isoform differs from the canonical sequence as follows:
     814-931: VDIPETHGGE...INHQKCCSEA → GGTLPPGTEP...KLEQERGSHC

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2020 Potential
Chain21 – 931911Neuropilin-2
PRO_0000021864

Regions

Topological domain21 – 864844Extracellular Potential
Transmembrane865 – 88925Helical; Potential
Topological domain890 – 93142Cytoplasmic Potential
Domain28 – 142115CUB 1
Domain149 – 267119CUB 2
Domain277 – 427151F5/8 type C 1
Domain434 – 592159F5/8 type C 2
Domain642 – 802161MAM
Compositional bias838 – 8458Poly-Ser

Sites

Metal binding1971Calcium By similarity
Metal binding2111Calcium By similarity
Metal binding2521Calcium By similarity

Amino acid modifications

Glycosylation1521N-linked (GlcNAc...) Potential
Glycosylation1571N-linked (GlcNAc...) Potential
Glycosylation6291N-linked (GlcNAc...) Potential
Glycosylation8391N-linked (GlcNAc...) Potential
Disulfide bond28 ↔ 55 By similarity
Disulfide bond83 ↔ 105 By similarity
Disulfide bond149 ↔ 175 By similarity
Disulfide bond208 ↔ 230 By similarity
Disulfide bond277 ↔ 427 By similarity
Disulfide bond434 ↔ 592 By similarity

Natural variations

Alternative sequence809 – 83022Missing in isoform A0.
VSP_004344
Alternative sequence809 – 8135Missing in isoform A17.
VSP_004343
Alternative sequence810 – 931122EDFKV…CCSEA → GTLPPGTEPTVDTVPVQPIP AYWYYVMAAGGAVLVLASVV LALVLHYHRFRYAAKKTDHS ITYKTSHYTNGAPLAVEPTL TIKLEQERGSHC in isoform B0.
VSP_004346
Alternative sequence814 – 931118VDIPE…CCSEA → GGTLPPGTEPTVDTVPVQPI PAYWYYVMAAGGAVLVLASV VLALVLHYHRFRYAAKKTDH SITYKTSHYTNGAPLAVEPT LTIKLEQERGSHC in isoform B5.
VSP_004347
Alternative sequence814 – 83017Missing in isoform A5.
VSP_004345

Experimental info

Sequence conflict321L → P in AAC53377. Ref.1
Sequence conflict321L → P in AAC53378. Ref.1
Sequence conflict321L → P in AAC53379. Ref.1
Sequence conflict321L → P in AAC53380. Ref.1
Sequence conflict321L → P in AAC53381. Ref.1
Sequence conflict321L → P in AAC53382. Ref.1
Sequence conflict7861I → G in AAC53377. Ref.1
Sequence conflict7861I → G in AAC53378. Ref.1
Sequence conflict7861I → G in AAC53382. Ref.1

Sequences

Sequence LengthMass (Da)Tools
Isoform A22 [UniParc].

Last modified July 27, 2011. Version 2.
Checksum: 08AA821E696A2885

FASTA931104,631
        10         20         30         40         50         60 
MDMFPLTWVF LALYFSGHEV RSQQDPPCGG RLNSKDAGYI TSPGYPQDYP SHQNCEWIVY 

        70         80         90        100        110        120 
APEPNQKIVL NFNPHFEIEK HDCKYDFIEI RDGDSESADL LGKHCGNIAP PTIISSGSVL 

       130        140        150        160        170        180 
YIKFTSDYAR QGAGFSLRYE IFKTGSEDCS KNFTSPNGTI ESPGFPEKYP HNLDCTFTIL 

       190        200        210        220        230        240 
AKPRMEIILQ FLTFDLEHDP LQVGEGDCKY DWLDIWDGIP HVGPLIGKYC GTKTPSKLRS 

       250        260        270        280        290        300 
STGILSLTFH TDMAVAKDGF SARYYLIHQE PPENFQCNVP LGMESGRIAN EQISASSTFS 

       310        320        330        340        350        360 
DGRWTPQQSR LHGDDNGWTP NLDSNKEYLQ VDLRFLTMLT AIATQGAISR ETQKGYYVKS 

       370        380        390        400        410        420 
YKLEVSTNGE DWMVYRHGKN HKIFQANNDA TEVVLNKLHM PLLTRFIRIR PQTWHLGIAL 

       430        440        450        460        470        480 
RLELFGCRVT DAPCSNMLGM LSGLIADTQI SASSTREYLW SPSAARLVSS RSGWFPRNPQ 

       490        500        510        520        530        540 
AQPGEEWLQV DLGTPKTVKG VIIQGARGGD SITAVEARAF VRKFKVSYSL NGKDWEYIQD 

       550        560        570        580        590        600 
PRTQQTKLFE GNMHYDTPDI RRFDPVPAQY VRVYPERWSP AGIGMRLEVL GCDWTDSKPT 

       610        620        630        640        650        660 
VETLGPTVKS EETTTPYPMD EDATECGENC SFEDDKDLQL PSGFNCNFDF PEETCGWVYD 

       670        680        690        700        710        720 
HAKWLRSTWI SSANPNDRTF PDDKNFLKLQ SDGRREGQYG RLISPPVHLP RSPVCMEFQY 

       730        740        750        760        770        780 
QAMGGHGVAL QVVREASQES KLLWVIREDQ GSEWKHGRII LPSYDMEYQI VFEGVIGKGR 

       790        800        810        820        830        840 
SGEISIDDIR ISTDVPLENC MEPISAFAGE DFKVDIPETH GGEGYEDEID DEYEGDWSNS 

       850        860        870        880        890        900 
SSSTSGAGDP SSGKEKSWLY TLDPILITII AMSSLGVLLG ATCAGLLLYC TCSYSGLSSR 

       910        920        930 
SCTTLENYNF ELYDGLKHKV KINHQKCCSE A 

« Hide

Isoform A0 [UniParc].

Checksum: A34352A52526A136
Show »

FASTA909102,198
Isoform A5 [UniParc].

Checksum: 6EA486DAB152F20B
Show »

FASTA914102,775
Isoform A17 [UniParc].

Checksum: 8073D6478C9A8467
Show »

FASTA926104,055
Isoform B0 [UniParc].

Checksum: F763734C2A09F52F
Show »

FASTA901101,418
Isoform B5 [UniParc].

Checksum: 6D66AF632D47A21F
Show »

FASTA906101,995

References

« Hide 'large scale' references
[1]"Neuropilin-2, a novel member of the neuropilin family, is a high affinity receptor for the semaphorins Sema E and Sema IV but not Sema III."
Chen H., Chedotal A., He Z.-G., Goodman C.S., Tessier-Lavigne M.
Neuron 19:547-559(1997) [PubMed: 9331348] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS A0; A17; A22; A5; B0 AND B5).
Strain: BALB/c.
[2]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed: 19468303] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF022856 mRNA. Translation: AAC53379.1.
AF022854 mRNA. Translation: AAC53377.1.
AF022855 mRNA. Translation: AAC53378.1.
AF022857 mRNA. Translation: AAC53380.1.
AF022858 mRNA. Translation: AAC53381.1.
AF022861 mRNA. Translation: AAC53382.1.
AL671560, AL645727 Genomic DNA. Translation: CAI24156.1.
AL645727, AL671560 Genomic DNA. Translation: CAI24511.1.
IPIIPI00129911.
IPI00227582.
IPI00227583.
IPI00227584.
IPI00755777.
IPI00876020.
RefSeqNP_001070871.1. NM_001077403.1.
UniGeneMm.266341.

3D structure databases

ProteinModelPortalO35375.
SMRO35375. Positions 26-595.
ModBaseSearch...

Protein-protein interaction databases

STRINGO35375.

Proteomic databases

PRIDEO35375.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000027112; ENSMUSP00000027112; ENSMUSG00000025969.
ENSMUST00000063594; ENSMUSP00000069379; ENSMUSG00000025969.
ENSMUST00000075144; ENSMUSP00000074642; ENSMUSG00000025969.
ENSMUST00000102822; ENSMUSP00000099886; ENSMUSG00000025969.
ENSMUST00000114155; ENSMUSP00000109792; ENSMUSG00000025969.
ENSMUST00000114157; ENSMUSP00000109794; ENSMUSG00000025969.
GeneID18187.
KEGGmmu:18187.

Organism-specific databases

CTD8828.
MGIMGI:1100492. Nrp2.

Phylogenomic databases

eggNOGroNOG04879.
HOGENOMHBG714573.
HOVERGENHBG000502.
InParanoidO35375.

Enzyme and pathway databases

ReactomeREACT_115492. Developmental Biology.

Gene expression databases

ArrayExpressO35375.
BgeeO35375.
CleanExMM_NRP2.
GenevestigatorO35375.
GermOnlineENSMUSG00000025969. Mus musculus.

Family and domain databases

InterProIPR000421. Coagulation_fac_5/8-C_type_dom.
IPR008985. ConA-like_lec_gl.
IPR000859. CUB.
IPR008979. Galactose-bd-like.
IPR000998. MAM_dom.
IPR014648. Neuropilin.
IPR022579. Neuropilin1_C.
[Graphical view]
Gene3DG3DSA:2.60.120.290. CUB. 2 hits.
KOK06819.
PfamPF00431. CUB. 2 hits.
PF11980. DUF3481. 1 hit.
PF00754. F5_F8_type_C. 2 hits.
PF00629. MAM. 1 hit.
[Graphical view]
PIRSFPIRSF036960. Neuropilin. 1 hit.
PRINTSPR00020. MAMDOMAIN.
SMARTSM00042. CUB. 2 hits.
SM00231. FA58C. 2 hits.
SM00137. MAM. 1 hit.
[Graphical view]
SUPFAMSSF49899. ConA_like_lec_gl. 1 hit.
SSF49854. CUB. 2 hits.
SSF49785. Gal_bind_like. 2 hits.
PROSITEPS01180. CUB. 2 hits.
PS01285. FA58C_1. 2 hits.
PS01286. FA58C_2. 2 hits.
PS50022. FA58C_3. 2 hits.
PS50060. MAM_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

SOURCESearch...

Entry information

Entry nameNRP2_MOUSE
AccessionPrimary (citable) accession number: O35375
Secondary accession number(s): B1AT44 expand/collapse secondary AC list , O35373, O35374, O35376, O35377, O35378
Entry history
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: July 27, 2011
Last modified: December 14, 2011
This is version 102 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

SIMILARITY comments

Index of protein domains and families