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Protein

Uncharacterized EAL-domain containing protein YkuI

Gene

ykuI

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU14090-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized EAL-domain containing protein YkuI
Gene namesi
Name:ykuI
Ordered Locus Names:BSU14090
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 407407Uncharacterized EAL-domain containing protein YkuIPRO_0000359924Add
BLAST

Proteomic databases

PaxDbiO35014.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100007826.

Structurei

Secondary structure

1
407
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi4 – 96Combined sources
Turni10 – 134Combined sources
Beta strandi14 – 4027Combined sources
Beta strandi43 – 475Combined sources
Helixi48 – 514Combined sources
Beta strandi54 – 563Combined sources
Helixi58 – 7619Combined sources
Beta strandi84 – 885Combined sources
Helixi91 – 944Combined sources
Helixi95 – 973Combined sources
Helixi100 – 11112Combined sources
Helixi116 – 1183Combined sources
Beta strandi119 – 1235Combined sources
Helixi125 – 1273Combined sources
Helixi132 – 14312Combined sources
Turni144 – 1463Combined sources
Beta strandi148 – 1547Combined sources
Turni155 – 1573Combined sources
Helixi161 – 1677Combined sources
Beta strandi170 – 1756Combined sources
Turni177 – 1793Combined sources
Helixi187 – 20216Combined sources
Beta strandi205 – 2095Combined sources
Helixi214 – 2229Combined sources
Beta strandi225 – 2284Combined sources
Turni231 – 2333Combined sources
Beta strandi237 – 2393Combined sources
Turni243 – 2464Combined sources
Helixi247 – 28741Combined sources
Helixi294 – 30411Combined sources
Helixi306 – 3083Combined sources
Beta strandi310 – 3167Combined sources
Beta strandi319 – 3213Combined sources
Beta strandi325 – 3295Combined sources
Beta strandi332 – 3365Combined sources
Helixi337 – 3393Combined sources
Helixi350 – 36011Combined sources
Turni372 – 3743Combined sources
Beta strandi376 – 38510Combined sources
Turni386 – 3883Combined sources
Beta strandi389 – 3957Combined sources
Helixi397 – 4004Combined sources
Beta strandi403 – 4053Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2BASX-ray2.61A/B1-407[»]
2W27X-ray2.80A/B1-407[»]
ProteinModelPortaliO35014.
SMRiO35014. Positions 2-407.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO35014.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 250250EALPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 EAL domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105EPM. Bacteria.
COG2200. LUCA.
HOGENOMiHOG000096090.
InParanoidiO35014.
OMAiTIAQQER.
OrthoDBiEOG6K9QJ9.
PhylomeDBiO35014.

Family and domain databases

Gene3Di3.20.20.450. 1 hit.
InterProiIPR001633. EAL_dom.
IPR029151. Sensor-like.
IPR018842. YkuI_C.
[Graphical view]
PfamiPF00563. EAL. 1 hit.
PF10388. YkuI_C. 1 hit.
[Graphical view]
SMARTiSM00052. EAL. 1 hit.
[Graphical view]
SUPFAMiSSF103190. SSF103190. 1 hit.
SSF141868. SSF141868. 1 hit.
PROSITEiPS50883. EAL. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O35014-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLDPLDILTN IDDVLPYYQA IFSAEEQKVV GYEVLGRILA DSEIQSLGPF
60 70 80 90 100
FLDAGIPEEY KLEVDNRIIR QALDRFLEAD SDLLIFMNQD ANLLMLDHGE
110 120 130 140 150
SFLELLKEYE AKGIELHRFV LEITEHNFEG DIEQLYHMLA YYRTYGIKIA
160 170 180 190 200
VDNIGKESSN LDRIALLSPD LLKIDLQALK VSQPSPSYEH VLYSISLLAR
210 220 230 240 250
KIGAALLYED IEANFQLQYA WRNGGRYFQG YYLVSPSETF LERDVLKQRL
260 270 280 290 300
KTEFHQFITH EKKKLETVYE HSEQFYKRVH QAVTSLRKNN LSSDDDFIKK
310 320 330 340 350
LAEELTDCSF RIYMCDEEGD QLTGNVFKQD GEWIYQPEYA EKNWSWRPYF
360 370 380 390 400
LENIMRMRNL RKGFFSDLYS DLETGEMIRT FSYPMDDQMY LFIDLPYSYL

YEQDGLI
Length:407
Mass (Da):47,957
Last modified:January 1, 1998 - v1
Checksum:i6477AC03CD0C9A4E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ222587 Genomic DNA. Translation: CAA10872.1.
AL009126 Genomic DNA. Translation: CAB13282.1.
PIRiF69865.
RefSeqiNP_389292.1. NC_000964.3.
WP_003232391.1. NZ_JNCM01000035.1.

Genome annotation databases

EnsemblBacteriaiCAB13282; CAB13282; BSU14090.
GeneIDi939207.
KEGGibsu:BSU14090.
PATRICi18974605. VBIBacSub10457_1494.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ222587 Genomic DNA. Translation: CAA10872.1.
AL009126 Genomic DNA. Translation: CAB13282.1.
PIRiF69865.
RefSeqiNP_389292.1. NC_000964.3.
WP_003232391.1. NZ_JNCM01000035.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2BASX-ray2.61A/B1-407[»]
2W27X-ray2.80A/B1-407[»]
ProteinModelPortaliO35014.
SMRiO35014. Positions 2-407.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100007826.

Proteomic databases

PaxDbiO35014.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13282; CAB13282; BSU14090.
GeneIDi939207.
KEGGibsu:BSU14090.
PATRICi18974605. VBIBacSub10457_1494.

Phylogenomic databases

eggNOGiENOG4105EPM. Bacteria.
COG2200. LUCA.
HOGENOMiHOG000096090.
InParanoidiO35014.
OMAiTIAQQER.
OrthoDBiEOG6K9QJ9.
PhylomeDBiO35014.

Enzyme and pathway databases

BioCyciBSUB:BSU14090-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO35014.

Family and domain databases

Gene3Di3.20.20.450. 1 hit.
InterProiIPR001633. EAL_dom.
IPR029151. Sensor-like.
IPR018842. YkuI_C.
[Graphical view]
PfamiPF00563. EAL. 1 hit.
PF10388. YkuI_C. 1 hit.
[Graphical view]
SMARTiSM00052. EAL. 1 hit.
[Graphical view]
SUPFAMiSSF103190. SSF103190. 1 hit.
SSF141868. SSF141868. 1 hit.
PROSITEiPS50883. EAL. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence of the Bacillus subtilis chromosome from ykuA to cse-15."
    Scanlan E., Devine K.M.
    Submitted (NOV-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.
  3. "Crystal structure of the Bacillus subtilis ykuI protein, with an EAL domain."
    Midwest center for structural genomics (MCSG)
    Submitted (NOV-2005) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.61 ANGSTROMS).

Entry informationi

Entry nameiYKUI_BACSU
AccessioniPrimary (citable) accession number: O35014
Secondary accession number(s): Q796K5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 1, 1998
Last modified: February 17, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.