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Protein

Putative lipoprotein YerB

Gene

yerB

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU06570-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative lipoprotein YerB
Gene namesi
Name:yerB
Synonyms:yecC
Ordered Locus Names:BSU06570
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

  • Cell membrane PROSITE-ProRule annotation; Lipid-anchor PROSITE-ProRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

Pathology & Biotechi

Disruption phenotypei

No PcrA-related phenotype.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919PROSITE-ProRule annotationAdd
BLAST
Chaini20 – 331312Putative lipoprotein YerBPRO_0000364085Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Lipidationi20 – 201N-palmitoyl cysteinePROSITE-ProRule annotation
Lipidationi20 – 201S-diacylglycerol cysteinePROSITE-ProRule annotation
Modified residuei97 – 971Phosphothreonine1 Publication
Modified residuei103 – 1031Phosphoserine1 Publication

Keywords - PTMi

Lipoprotein, Palmitate, Phosphoprotein

Proteomic databases

PaxDbiO34968.

PTM databases

iPTMnetiO34968.

Interactioni

Subunit structurei

Interacts with PcrA. The interaction is not essential for cell viability or repair of UV-induced lesions.1 Publication

Protein-protein interaction databases

IntActiO34968. 1 interaction.
STRINGi224308.Bsubs1_010100003713.

Structurei

Secondary structure

1
331
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Turni36 – 383Combined sources
Helixi44 – 485Combined sources
Beta strandi52 – 565Combined sources
Helixi60 – 623Combined sources
Beta strandi72 – 787Combined sources
Beta strandi84 – 9310Combined sources
Beta strandi96 – 994Combined sources
Helixi106 – 1138Combined sources
Turni114 – 1163Combined sources
Beta strandi118 – 1225Combined sources
Helixi126 – 1338Combined sources
Beta strandi139 – 1413Combined sources
Helixi142 – 1454Combined sources
Turni147 – 1493Combined sources
Beta strandi150 – 1523Combined sources
Beta strandi154 – 1563Combined sources
Beta strandi162 – 1654Combined sources
Helixi166 – 17611Combined sources
Beta strandi202 – 2065Combined sources
Beta strandi215 – 2217Combined sources
Turni222 – 2254Combined sources
Beta strandi226 – 2316Combined sources
Turni239 – 2413Combined sources
Beta strandi242 – 2443Combined sources
Beta strandi247 – 2548Combined sources
Beta strandi256 – 2594Combined sources
Beta strandi261 – 2633Combined sources
Beta strandi266 – 2694Combined sources
Beta strandi274 – 2807Combined sources
Beta strandi283 – 29210Combined sources
Beta strandi295 – 3006Combined sources
Beta strandi312 – 3187Combined sources
Helixi320 – 3223Combined sources
Beta strandi323 – 3264Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2PSBX-ray2.10A21-331[»]
ProteinModelPortaliO34968.
SMRiO34968. Positions 32-327.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO34968.

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4108R5T. Bacteria.
ENOG4111FHM. LUCA.
HOGENOMiHOG000245316.
InParanoidiO34968.
OMAiPGKTWIN.
PhylomeDBiO34968.

Family and domain databases

Gene3Di3.50.90.10. 1 hit.
InterProiIPR021416. DUF3048.
IPR023158. YerB-like_domain.
[Graphical view]
PfamiPF11258. DUF3048. 1 hit.
[Graphical view]
SUPFAMiSSF159774. SSF159774. 1 hit.
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O34968-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKWMTVCAL CFVFFLLVSC QQKDAVPDTA KKLKAPLTGL KTEQKVTERR
60 70 80 90 100
PVAVVVNNHP KARPQSGLSK ADIVIEALAE GQITRFLAIF QSQMPETVGP
110 120 130 140 150
VRSAREYFVT LSNGFDSIFV HHGWSPGAKK QLESGAADYM NGLDFDGSLF
160 170 180 190 200
WRADFSKPPH NSYTSYDYIK KAAEQKGYKL KQETNPLLFQ TSDAKPANES
210 220 230 240 250
YNVRVDYGTN NVTNLVEYNY DKKAEFYTRS SDGVITTDRE TGKPVAMQNI
260 270 280 290 300
FIVEASHHII DQDGRRDIDL ESGGKGLLFQ HGNVIETDWK QVNGRIVPVK
310 320 330
DGKWLPFVPG KTWINIVPDL DAASISKGEG V
Length:331
Mass (Da):36,969
Last modified:January 1, 1998 - v1
Checksum:iCD2D795F959E15FC
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti2 – 21K → E in AAB72189 (PubMed:8969499).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF011544 Genomic DNA. Translation: AAB72189.1.
Y15254 Genomic DNA. Translation: CAA75548.1.
AL009126 Genomic DNA. Translation: CAB12477.1.
PIRiA69794.
RefSeqiNP_388539.1. NC_000964.3.
WP_003233927.1. NZ_JNCM01000032.1.

Genome annotation databases

EnsemblBacteriaiCAB12477; CAB12477; BSU06570.
GeneIDi936050.
KEGGibsu:BSU06570.
PATRICi18972958. VBIBacSub10457_0693.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF011544 Genomic DNA. Translation: AAB72189.1.
Y15254 Genomic DNA. Translation: CAA75548.1.
AL009126 Genomic DNA. Translation: CAB12477.1.
PIRiA69794.
RefSeqiNP_388539.1. NC_000964.3.
WP_003233927.1. NZ_JNCM01000032.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2PSBX-ray2.10A21-331[»]
ProteinModelPortaliO34968.
SMRiO34968. Positions 32-327.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO34968. 1 interaction.
STRINGi224308.Bsubs1_010100003713.

PTM databases

iPTMnetiO34968.

Proteomic databases

PaxDbiO34968.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12477; CAB12477; BSU06570.
GeneIDi936050.
KEGGibsu:BSU06570.
PATRICi18972958. VBIBacSub10457_0693.

Phylogenomic databases

eggNOGiENOG4108R5T. Bacteria.
ENOG4111FHM. LUCA.
HOGENOMiHOG000245316.
InParanoidiO34968.
OMAiPGKTWIN.
PhylomeDBiO34968.

Enzyme and pathway databases

BioCyciBSUB:BSU06570-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO34968.

Family and domain databases

Gene3Di3.50.90.10. 1 hit.
InterProiIPR021416. DUF3048.
IPR023158. YerB-like_domain.
[Graphical view]
PfamiPF11258. DUF3048. 1 hit.
[Graphical view]
SUPFAMiSSF159774. SSF159774. 1 hit.
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYERB_BACSU
AccessioniPrimary (citable) accession number: O34968
Secondary accession number(s): O30567, Q799E9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: January 1, 1998
Last modified: September 7, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.