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Protein

Putative lipoprotein YerB

Gene

yerB

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU06570-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative lipoprotein YerB
Gene namesi
Name:yerB
Synonyms:yecC
Ordered Locus Names:BSU06570
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

  • Cell membrane PROSITE-ProRule annotation; Lipid-anchor PROSITE-ProRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

Pathology & Biotechi

Disruption phenotypei

No PcrA-related phenotype.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19PROSITE-ProRule annotationAdd BLAST19
ChainiPRO_000036408520 – 331Putative lipoprotein YerBAdd BLAST312

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi20N-palmitoyl cysteinePROSITE-ProRule annotation1
Lipidationi20S-diacylglycerol cysteinePROSITE-ProRule annotation1
Modified residuei97Phosphothreonine1 Publication1
Modified residuei103Phosphoserine1 Publication1

Keywords - PTMi

Lipoprotein, Palmitate, Phosphoprotein

Proteomic databases

PaxDbiO34968.

PTM databases

iPTMnetiO34968.

Interactioni

Subunit structurei

Interacts with PcrA. The interaction is not essential for cell viability or repair of UV-induced lesions.1 Publication

Protein-protein interaction databases

IntActiO34968. 1 interactor.
STRINGi224308.Bsubs1_010100003713.

Structurei

Secondary structure

1331
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Turni36 – 38Combined sources3
Helixi44 – 48Combined sources5
Beta strandi52 – 56Combined sources5
Helixi60 – 62Combined sources3
Beta strandi72 – 78Combined sources7
Beta strandi84 – 93Combined sources10
Beta strandi96 – 99Combined sources4
Helixi106 – 113Combined sources8
Turni114 – 116Combined sources3
Beta strandi118 – 122Combined sources5
Helixi126 – 133Combined sources8
Beta strandi139 – 141Combined sources3
Helixi142 – 145Combined sources4
Turni147 – 149Combined sources3
Beta strandi150 – 152Combined sources3
Beta strandi154 – 156Combined sources3
Beta strandi162 – 165Combined sources4
Helixi166 – 176Combined sources11
Beta strandi202 – 206Combined sources5
Beta strandi215 – 221Combined sources7
Turni222 – 225Combined sources4
Beta strandi226 – 231Combined sources6
Turni239 – 241Combined sources3
Beta strandi242 – 244Combined sources3
Beta strandi247 – 254Combined sources8
Beta strandi256 – 259Combined sources4
Beta strandi261 – 263Combined sources3
Beta strandi266 – 269Combined sources4
Beta strandi274 – 280Combined sources7
Beta strandi283 – 292Combined sources10
Beta strandi295 – 300Combined sources6
Beta strandi312 – 318Combined sources7
Helixi320 – 322Combined sources3
Beta strandi323 – 326Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2PSBX-ray2.10A21-331[»]
ProteinModelPortaliO34968.
SMRiO34968.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO34968.

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4108R5T. Bacteria.
ENOG4111FHM. LUCA.
HOGENOMiHOG000245316.
InParanoidiO34968.
OMAiPGKTWIN.
PhylomeDBiO34968.

Family and domain databases

Gene3Di3.50.90.10. 1 hit.
InterProiIPR021416. DUF3048.
IPR023158. YerB-like_domain.
[Graphical view]
PfamiPF11258. DUF3048. 1 hit.
[Graphical view]
SUPFAMiSSF159774. SSF159774. 1 hit.
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O34968-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKWMTVCAL CFVFFLLVSC QQKDAVPDTA KKLKAPLTGL KTEQKVTERR
60 70 80 90 100
PVAVVVNNHP KARPQSGLSK ADIVIEALAE GQITRFLAIF QSQMPETVGP
110 120 130 140 150
VRSAREYFVT LSNGFDSIFV HHGWSPGAKK QLESGAADYM NGLDFDGSLF
160 170 180 190 200
WRADFSKPPH NSYTSYDYIK KAAEQKGYKL KQETNPLLFQ TSDAKPANES
210 220 230 240 250
YNVRVDYGTN NVTNLVEYNY DKKAEFYTRS SDGVITTDRE TGKPVAMQNI
260 270 280 290 300
FIVEASHHII DQDGRRDIDL ESGGKGLLFQ HGNVIETDWK QVNGRIVPVK
310 320 330
DGKWLPFVPG KTWINIVPDL DAASISKGEG V
Length:331
Mass (Da):36,969
Last modified:January 1, 1998 - v1
Checksum:iCD2D795F959E15FC
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti2K → E in AAB72189 (PubMed:8969499).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF011544 Genomic DNA. Translation: AAB72189.1.
Y15254 Genomic DNA. Translation: CAA75548.1.
AL009126 Genomic DNA. Translation: CAB12477.1.
PIRiA69794.
RefSeqiNP_388539.1. NC_000964.3.
WP_003233927.1. NZ_JNCM01000032.1.

Genome annotation databases

EnsemblBacteriaiCAB12477; CAB12477; BSU06570.
GeneIDi936050.
KEGGibsu:BSU06570.
PATRICi18972958. VBIBacSub10457_0693.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF011544 Genomic DNA. Translation: AAB72189.1.
Y15254 Genomic DNA. Translation: CAA75548.1.
AL009126 Genomic DNA. Translation: CAB12477.1.
PIRiA69794.
RefSeqiNP_388539.1. NC_000964.3.
WP_003233927.1. NZ_JNCM01000032.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2PSBX-ray2.10A21-331[»]
ProteinModelPortaliO34968.
SMRiO34968.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO34968. 1 interactor.
STRINGi224308.Bsubs1_010100003713.

PTM databases

iPTMnetiO34968.

Proteomic databases

PaxDbiO34968.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12477; CAB12477; BSU06570.
GeneIDi936050.
KEGGibsu:BSU06570.
PATRICi18972958. VBIBacSub10457_0693.

Phylogenomic databases

eggNOGiENOG4108R5T. Bacteria.
ENOG4111FHM. LUCA.
HOGENOMiHOG000245316.
InParanoidiO34968.
OMAiPGKTWIN.
PhylomeDBiO34968.

Enzyme and pathway databases

BioCyciBSUB:BSU06570-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO34968.

Family and domain databases

Gene3Di3.50.90.10. 1 hit.
InterProiIPR021416. DUF3048.
IPR023158. YerB-like_domain.
[Graphical view]
PfamiPF11258. DUF3048. 1 hit.
[Graphical view]
SUPFAMiSSF159774. SSF159774. 1 hit.
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYERB_BACSU
AccessioniPrimary (citable) accession number: O34968
Secondary accession number(s): O30567, Q799E9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: January 1, 1998
Last modified: November 2, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.