Probable polysaccharide deacetylase pdaA precursor - Bacillus subtilis

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Reviewed, UniProtKB/Swiss-Prot O34928 (PDAA_BACSU)

Last modified June 16, 2009. Version 64. History...

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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein names

Recommended name:
Probable polysaccharide deacetylase pdaA
EC=3.-.-.-

Gene names

Name:	pdaA
Synonyms:	yfjS
Ordered Locus Names:	BSU07980

Organism

Bacillus subtilis [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus

Protein attributes

Sequence length	263 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level.

General annotation (Comments)

Function	Required for production of muramic delta-lactam residues in the spore cortex and for germination.
Developmental stage	Expressed in the forespore, then exported into the developing cortex.
Induction	Expression is sigma G-dependent.
Sequence similarities	Belongs to the polysaccharide deacetylase family.

Ontologies

Keywords
Biological process	Sporulation
Domain	Signal
Molecular function	Hydrolase
Technical term	3D-structure Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro sporulation resulting in formation of a cellular spore Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Signal peptide

23

Potential

Chain

240

Probable polysaccharide deacetylase pdaA

PRO_0000024842

Secondary structure

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263

Helix Strand Turn

Sequences

Sequence

Length

Mass (Da)

Tools

O34928-1 [UniParc].

Last modified January 1, 1998. Version 1.
Checksum: FEA2251646D169A0
Show »

263

30,069

        10         20         30         40         50         60 
MKWMCSICCA AVLLAGGAAQ AEAVPNEPIN WGFKRSVNHQ PPDAGKQLNS LIEKYDAFYL 

        70         80         90        100        110        120 
GNTKEKTIYL TFDNGYENGY TPKVLDVLKK HRVTGTFFVT GHFVKDQPQL IKRMSDEGHI 

       130        140        150        160        170        180 
IGNHSFHHPD LTTKTADQIQ DELDSVNEEV YKITGKQDNL YLRPPRGVFS EYVLKETKRL 

       190        200        210        220        230        240 
GYQTVFWSVA FVDWKINNQK GKKYAYDHMI KQAHPGAIYL LHTVSRDNAE ALDDAITDLK 

       250        260 
KQGYTFKSID DLMFEKEMRL PSL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Cloning and sequencing of a 40.6 kb segment in the 73 degrees-76 degrees region of the Bacillus subtilis chromosome containing genes for trehalose metabolism and acetoin utilization." Yamamoto H., Uchiyama S., Sekiguchi J. Microbiology 142:3057-3065(1996) [PubMed: 8969503] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: 168 / AC327.
[2]	"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis." Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. Danchin A. Nature 390:249-256(1997) [PubMed: 9384377] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 168.
[3]	"A polysaccharide deacetylase gene (pdaA) is required for germination and for production of muramic delta-lactam residues in the spore cortex of Bacillus subtilis." Fukushima T., Yamamoto H., Atrih A., Foster S.J., Sekiguchi J. J. Bacteriol. 184:6007-6015(2002) [PubMed: 12374835] [Abstract] Cited for: CHARACTERIZATION. Strain: 168.
+	Additional computationally mapped references.

Cross-references

Sequence databases

D83967 Genomic DNA. Translation: BAA23389.1.
AL009126 Genomic DNA. Translation: CAB12627.1.

PIR

RefSeq

3D structure databases

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1NY1	X-ray	1.80	A/B	24-263	[»]
1W17	X-ray	1.90	A/B	1-263	[»]
1W1A	X-ray	2.25	1/2	12-263	[»]
1W1B	X-ray	2.10	1/2	12-263	[»]

ModBase

Genome annotation databases

GeneID

GenomeReviews

Gene locus BSU07980 in contig AL009126_GR.

KEGG

NMPDR

fig|224308.1.peg.798.

Organism-specific databases

SubtiList

BG12915. pdaA. [Micado]

CMR

Phylogenomic databases

HOGENOM

OMA

O34928. YLRPPRG.

Enzyme and pathway databases

BioCyc

BSUB224308:BSU0798-MON.

Family and domain databases

InterPro

IPR002509. Polysac_deacetylase.
IPR014235. Spore_PdaA.
[Graphical view]

Gene3D

G3DSA:3.20.20.370. Polysac_deacetylase. 1 hit.

Pfam

PF01522. Polysacc_deac_1. 1 hit.
[Graphical view]

TIGRFAMs

TIGR02884. spore_pdaA. 1 hit.

ProtoNet

Entry information

Entry name

PDAA_BACSU

Accession

Primary (citable) accession number: O34928

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 25, 2002
Last sequence update:	January 1, 1998
Last modified:	June 16, 2009
This is version 64 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents