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O34928 (PDAA_BACSU) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 81. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Probable polysaccharide deacetylase pdaA
EC=3.-.-.-
Gene names
Name:pdaA
Synonyms:yfjS
Ordered Locus Names:BSU07980
OrganismBacillus subtilis
Taxonomic identifier1423 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus

Protein attributes

Sequence length263 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Required for production of muramic delta-lactam residues in the spore cortex and for germination.

Developmental stage

Expressed in the forespore, then exported into the developing cortex.

Induction

Expression is sigma G-dependent.

Sequence similarities

Belongs to the polysaccharide deacetylase family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2323 Potential
Chain24 – 263240Probable polysaccharide deacetylase pdaA
PRO_0000024842

Secondary structure

1 ....................................... 263
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
O34928 [UniParc].

Last modified January 1, 1998. Version 1.
Checksum: FEA2251646D169A0

FASTA26330,069
        10         20         30         40         50         60 
MKWMCSICCA AVLLAGGAAQ AEAVPNEPIN WGFKRSVNHQ PPDAGKQLNS LIEKYDAFYL 

        70         80         90        100        110        120 
GNTKEKTIYL TFDNGYENGY TPKVLDVLKK HRVTGTFFVT GHFVKDQPQL IKRMSDEGHI 

       130        140        150        160        170        180 
IGNHSFHHPD LTTKTADQIQ DELDSVNEEV YKITGKQDNL YLRPPRGVFS EYVLKETKRL 

       190        200        210        220        230        240 
GYQTVFWSVA FVDWKINNQK GKKYAYDHMI KQAHPGAIYL LHTVSRDNAE ALDDAITDLK 

       250        260 
KQGYTFKSID DLMFEKEMRL PSL

« Hide

References

« Hide 'large scale' references
[1]"Cloning and sequencing of a 40.6 kb segment in the 73 degrees-76 degrees region of the Bacillus subtilis chromosome containing genes for trehalose metabolism and acetoin utilization."
Yamamoto H., Uchiyama S., Sekiguchi J.
Microbiology 142:3057-3065(1996) [PubMed: 8969503] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 168 / AC327.
[2]"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. expand/collapse author list , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
Nature 390:249-256(1997) [PubMed: 9384377] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 168.
[3]"A polysaccharide deacetylase gene (pdaA) is required for germination and for production of muramic delta-lactam residues in the spore cortex of Bacillus subtilis."
Fukushima T., Yamamoto H., Atrih A., Foster S.J., Sekiguchi J.
J. Bacteriol. 184:6007-6015(2002) [PubMed: 12374835] [Abstract]
Cited for: CHARACTERIZATION.
Strain: 168.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		D83967 Genomic DNA. Translation: BAA23389.1.
AL009126 Genomic DNA. Translation: CAB12627.1.
PIRB69807.
RefSeqNP_388679.1. NC_000964.3.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1NY1X-ray1.80A/B24-263[»]
1W17X-ray1.90A/B1-263[»]
1W1AX-ray2.251/212-263[»]
1W1BX-ray2.101/212-263[»]
ProteinModelPortalO34928.
SMRO34928. Positions 24-258.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBBACT00000002721; EBBACP00000002721; EBBACG00000002716.
GeneID936136.
GenomeReviewsGene locus BSU07980 in contig AL009126_GR.
KEGGbsu:BSU07980.
NMPDRfig|224308.1.peg.798.
PATRIC18973246. VBIBacSub10457_0837.

Organism-specific databases

GenoListBSU07980. [Micado]

Phylogenomic databases

GeneTreeEBGT00070000031813.
HOGENOMHBG751163.
OMARPPRGIF.
PhylomeDBO34928.
ProtClustDBCLSK872862.

Enzyme and pathway databases

BioCycBSUB:BSU07980-MONOMER.

Family and domain databases

InterProIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR002509. Polysac_deacetylase.
IPR014235. Spore_PdaA.
[Graphical view]
Gene3DG3DSA:3.20.20.370. Polysac_deacetylase. 1 hit.
KOK01567.
PfamPF01522. Polysacc_deac_1. 1 hit.
[Graphical view]
SUPFAMSSF88713. Glyco_hydro/deAcase_b/a-brl. 1 hit.
TIGRFAMsTIGR02884. Spore_pdaA. 1 hit.
ProtoNetSearch...

Entry information

Entry namePDAA_BACSU
AccessionPrimary (citable) accession number: O34928
Entry history
Integrated into UniProtKB/Swiss-Prot: November 25, 2002
Last sequence update: January 1, 1998
Last modified: January 25, 2012
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents