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O34925

- DEOD_BACSU

UniProt

O34925 - DEOD_BACSU

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Protein

Purine nucleoside phosphorylase DeoD-type

Gene
deoD, punB, BSU19630
Organism
Bacillus subtilis (strain 168)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Cleavage of adenosine and its derivatives.UniRule annotation

Catalytic activityi

Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

GO - Molecular functioni

  1. purine-nucleoside phosphorylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. purine nucleoside metabolic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Enzyme and pathway databases

BioCyciBSUB:BSU19630-MONOMER.
SABIO-RKO34925.

Names & Taxonomyi

Protein namesi
Recommended name:
Purine nucleoside phosphorylase DeoD-type (EC:2.4.2.1)
Short name:
PNP
Alternative name(s):
Purine nucleoside phosphorylase II
Short name:
PU-NPase II
Gene namesi
Name:deoD
Synonyms:punB
Ordered Locus Names:BSU19630
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001570: Chromosome

Organism-specific databases

GenoListiBSU19630. [Micado]

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 233233Purine nucleoside phosphorylase DeoD-typeUniRule annotationPRO_0000063121Add
BLAST

Proteomic databases

PaxDbiO34925.

Interactioni

Subunit structurei

Homohexamer By similarity.UniRule annotation

Protein-protein interaction databases

IntActiO34925. 1 interaction.
MINTiMINT-8366691.
STRINGi224308.BSU19630.

Structurei

Secondary structure

1
233
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi9 – 113
Beta strandi14 – 185
Helixi22 – 3211
Beta strandi34 – 407
Helixi42 – 443
Beta strandi47 – 526
Beta strandi55 – 606
Helixi66 – 8015
Beta strandi84 – 9310
Beta strandi95 – 984
Beta strandi103 – 11210
Helixi115 – 1206
Helixi131 – 14414
Beta strandi148 – 1558
Helixi166 – 1716
Beta strandi176 – 1805
Helixi181 – 19010
Beta strandi194 – 20411
Turni205 – 2073
Helixi213 – 22715
Turni228 – 2303

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4D8VX-ray2.35A/B1-233[»]
4D8XX-ray2.65A1-233[»]
4D8YX-ray1.61A/B/C/D/E/F1-233[»]
4D98X-ray1.70A/B1-233[»]
4D9HX-ray1.91A/B1-233[»]
4DA0X-ray2.95A1-233[»]
4DA6X-ray1.70A1-233[»]
4DA7X-ray2.05A1-233[»]
4DA8X-ray2.60A1-233[»]
4DABX-ray1.85A1-233[»]
4DAEX-ray2.35A1-233[»]
4DANX-ray2.56A/B1-233[»]
4DAOX-ray2.22A/B1-233[»]
4DARX-ray3.15A1-233[»]
ProteinModelPortaliO34925.
SMRiO34925. Positions 1-228.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0813.
HOGENOMiHOG000274896.
KOiK03784.
OMAiECYNEVR.
OrthoDBiEOG6BKJC5.
PhylomeDBiO34925.

Family and domain databases

Gene3Di3.40.50.1580. 1 hit.
HAMAPiMF_01627. Pur_nucleosid_phosp.
InterProiIPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR018016. Nucleoside_phosphorylase_CS.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view]
PANTHERiPTHR21234. PTHR21234. 1 hit.
PfamiPF01048. PNP_UDP_1. 1 hit.
[Graphical view]
SUPFAMiSSF53167. SSF53167. 1 hit.
TIGRFAMsiTIGR00107. deoD. 1 hit.
PROSITEiPS01232. PNP_UDP_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O34925-1 [UniParc]FASTAAdd to Basket

« Hide

MSVHIGAEKG QIADTVLLPG DPLRAKFIAE TYLENVECYN EVRGMYGFTG    50
TYKGKKISVQ GTGMGVPSIS IYVNELIQSY DVQNLIRVGS CGAIRKDVKV 100
RDVILAMTSS TDSQMNRVAF GSVDFAPCAD FELLKNAYDA AKDKGVPVTV 150
GSVFTADQFY NDDSQIEKLA KYGVLGVEME TTALYTLAAK HGRKALSILT 200
VSDHVLTGEE TTAEERQTTF HDMIEVALHS VSQ 233
Length:233
Mass (Da):25,378
Last modified:January 1, 1998 - v1
Checksum:i645FD21146E8F613
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF015775 Genomic DNA. Translation: AAB72065.1.
AF006665 Genomic DNA. Translation: AAB81164.1.
AL009126 Genomic DNA. Translation: CAB13854.1.
PIRiD69614.
RefSeqiNP_389844.1. NC_000964.3.
WP_003231176.1. NZ_CM000487.1.

Genome annotation databases

EnsemblBacteriaiCAB13854; CAB13854; BSU19630.
GeneIDi940038.
KEGGibsu:BSU19630.
PATRICi18975779. VBIBacSub10457_2080.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF015775 Genomic DNA. Translation: AAB72065.1 .
AF006665 Genomic DNA. Translation: AAB81164.1 .
AL009126 Genomic DNA. Translation: CAB13854.1 .
PIRi D69614.
RefSeqi NP_389844.1. NC_000964.3.
WP_003231176.1. NZ_CM000487.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4D8V X-ray 2.35 A/B 1-233 [» ]
4D8X X-ray 2.65 A 1-233 [» ]
4D8Y X-ray 1.61 A/B/C/D/E/F 1-233 [» ]
4D98 X-ray 1.70 A/B 1-233 [» ]
4D9H X-ray 1.91 A/B 1-233 [» ]
4DA0 X-ray 2.95 A 1-233 [» ]
4DA6 X-ray 1.70 A 1-233 [» ]
4DA7 X-ray 2.05 A 1-233 [» ]
4DA8 X-ray 2.60 A 1-233 [» ]
4DAB X-ray 1.85 A 1-233 [» ]
4DAE X-ray 2.35 A 1-233 [» ]
4DAN X-ray 2.56 A/B 1-233 [» ]
4DAO X-ray 2.22 A/B 1-233 [» ]
4DAR X-ray 3.15 A 1-233 [» ]
ProteinModelPortali O34925.
SMRi O34925. Positions 1-228.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi O34925. 1 interaction.
MINTi MINT-8366691.
STRINGi 224308.BSU19630.

Proteomic databases

PaxDbi O34925.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAB13854 ; CAB13854 ; BSU19630 .
GeneIDi 940038.
KEGGi bsu:BSU19630.
PATRICi 18975779. VBIBacSub10457_2080.

Organism-specific databases

GenoListi BSU19630. [Micado ]

Phylogenomic databases

eggNOGi COG0813.
HOGENOMi HOG000274896.
KOi K03784.
OMAi ECYNEVR.
OrthoDBi EOG6BKJC5.
PhylomeDBi O34925.

Enzyme and pathway databases

BioCyci BSUB:BSU19630-MONOMER.
SABIO-RK O34925.

Family and domain databases

Gene3Di 3.40.50.1580. 1 hit.
HAMAPi MF_01627. Pur_nucleosid_phosp.
InterProi IPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR018016. Nucleoside_phosphorylase_CS.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view ]
PANTHERi PTHR21234. PTHR21234. 1 hit.
Pfami PF01048. PNP_UDP_1. 1 hit.
[Graphical view ]
SUPFAMi SSF53167. SSF53167. 1 hit.
TIGRFAMsi TIGR00107. deoD. 1 hit.
PROSITEi PS01232. PNP_UDP_1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence analysis of the Bacillus subtilis 168 chromosome region between the sspC and odhA loci (184 degrees-180 degrees)."
    Ghim S.-Y., Choi S.-K., Shin B.-S., Jeong Y.-M., Sorokin A., Ehrlich S.D., Park S.-H.
    DNA Res. 5:195-201(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiDEOD_BACSU
AccessioniPrimary (citable) accession number: O34925
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: January 1, 1998
Last modified: September 3, 2014
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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