Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Expansin-YoaJ

Gene

yoaJ

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

May promote colonization of plant roots. May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. Has very low expansin activity (in vitro). No enzymatic activity has been found. Binds to peptidoglycan and to plant cell walls.1 Publication

Enzyme and pathway databases

BioCyciBSUB:BSU18630-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Expansin-YoaJ
Alternative name(s):
EXLX1
Gene namesi
Name:yoaJ
Ordered Locus Names:BSU18630
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell wall, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2525Sequence analysisAdd
BLAST
Chaini26 – 232207Expansin-YoaJPRO_0000359936Add
BLAST

Proteomic databases

PaxDbiO34918.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100010266.

Structurei

Secondary structure

1
232
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi31 – 377Combined sources
Beta strandi42 – 443Combined sources
Beta strandi58 – 614Combined sources
Helixi63 – 664Combined sources
Helixi68 – 703Combined sources
Turni72 – 776Combined sources
Beta strandi79 – 846Combined sources
Beta strandi87 – 9610Combined sources
Beta strandi105 – 1073Combined sources
Helixi109 – 1157Combined sources
Helixi118 – 1203Combined sources
Beta strandi121 – 13010Combined sources
Beta strandi139 – 1424Combined sources
Beta strandi147 – 15711Combined sources
Beta strandi162 – 1698Combined sources
Beta strandi172 – 1787Combined sources
Beta strandi184 – 1874Combined sources
Beta strandi191 – 20010Combined sources
Beta strandi205 – 2106Combined sources
Beta strandi222 – 2254Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2BH0X-ray2.50A26-232[»]
3D30X-ray1.90A26-232[»]
4FERX-ray2.10A/B26-232[»]
4FFTX-ray2.10A/B26-232[»]
4FG2X-ray2.10A/B26-232[»]
4FG4X-ray2.70A/B26-232[»]
ProteinModelPortaliO34918.
SMRiO34918. Positions 26-232.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO34918.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini58 – 12770Expansin-like EG45Add
BLAST

Sequence similaritiesi

Contains 1 expansin-like EG45 domain.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4108YQE. Bacteria.
COG4305. LUCA.
HOGENOMiHOG000287018.
InParanoidiO34918.
OMAiNHFVSTN.
OrthoDBiEOG683S6J.

Family and domain databases

Gene3Di2.40.40.10. 1 hit.
2.60.40.760. 1 hit.
InterProiIPR007117. Expansin_CBD.
IPR009009. RlpA-like_DPBB.
[Graphical view]
PfamiPF03330. DPBB_1. 1 hit.
[Graphical view]
SUPFAMiSSF49590. SSF49590. 1 hit.
SSF50685. SSF50685. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O34918-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKIMSAFVG MVLLTIFCFS PQASAAYDDL HEGYATYTGS GYSGGAFLLD
60 70 80 90 100
PIPSDMEITA INPADLNYGG VKAALAGSYL EVEGPKGKTT VYVTDLYPEG
110 120 130 140 150
ARGALDLSPN AFRKIGNMKD GKINIKWRVV KAPITGNFTY RIKEGSSRWW
160 170 180 190 200
AAIQVRNHKY PVMKMEYEKD GKWINMEKMD YNHFVSTNLG TGSLKVRMTD
210 220 230
IRGKVVKDTI PKLPESGTSK AYTVPGHVQF PE
Length:232
Mass (Da):25,638
Last modified:January 1, 1998 - v1
Checksum:i4182A234D6224D46
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF027868 Genomic DNA. Translation: AAB84448.1.
AL009126 Genomic DNA. Translation: CAB13755.1.
PIRiD69896.
RefSeqiNP_389744.1. NC_000964.3.
WP_003231419.1. NZ_JNCM01000036.1.

Genome annotation databases

EnsemblBacteriaiCAB13755; CAB13755; BSU18630.
GeneIDi940108.
KEGGibsu:BSU18630.
PATRICi18975567. VBIBacSub10457_1974.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF027868 Genomic DNA. Translation: AAB84448.1.
AL009126 Genomic DNA. Translation: CAB13755.1.
PIRiD69896.
RefSeqiNP_389744.1. NC_000964.3.
WP_003231419.1. NZ_JNCM01000036.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2BH0X-ray2.50A26-232[»]
3D30X-ray1.90A26-232[»]
4FERX-ray2.10A/B26-232[»]
4FFTX-ray2.10A/B26-232[»]
4FG2X-ray2.10A/B26-232[»]
4FG4X-ray2.70A/B26-232[»]
ProteinModelPortaliO34918.
SMRiO34918. Positions 26-232.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100010266.

Proteomic databases

PaxDbiO34918.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13755; CAB13755; BSU18630.
GeneIDi940108.
KEGGibsu:BSU18630.
PATRICi18975567. VBIBacSub10457_1974.

Phylogenomic databases

eggNOGiENOG4108YQE. Bacteria.
COG4305. LUCA.
HOGENOMiHOG000287018.
InParanoidiO34918.
OMAiNHFVSTN.
OrthoDBiEOG683S6J.

Enzyme and pathway databases

BioCyciBSUB:BSU18630-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO34918.

Family and domain databases

Gene3Di2.40.40.10. 1 hit.
2.60.40.760. 1 hit.
InterProiIPR007117. Expansin_CBD.
IPR009009. RlpA-like_DPBB.
[Graphical view]
PfamiPF03330. DPBB_1. 1 hit.
[Graphical view]
SUPFAMiSSF49590. SSF49590. 1 hit.
SSF50685. SSF50685. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence analysis of the Bacillus subtilis chromosome region between the terC and odhAB loci cloned in a yeast artificial chromosome."
    Lapidus A., Galleron N., Sorokin A., Ehrlich S.D.
    Submitted (OCT-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.
  3. "Crystal structure and activity of Bacillus subtilis YoaJ (EXLX1), a bacterial expansin that promotes root colonization."
    Kerff F., Amoroso A., Herman R., Sauvage E., Petrella S., Filee P., Charlier P., Joris B., Tabuchi A., Nikolaidis N., Cosgrove D.J.
    Proc. Natl. Acad. Sci. U.S.A. 105:16876-16881(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.5 ANGSTROMS) OF 26-232, FUNCTION, SUBCELLULAR LOCATION.

Entry informationi

Entry nameiYOAJ_BACSU
AccessioniPrimary (citable) accession number: O34918
Secondary accession number(s): Q796F6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 1, 1998
Last modified: February 17, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.