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Protein

Uncharacterized HTH-type transcriptional regulator YobQ

Gene

yobQ

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi154 – 175H-T-H motifPROSITE-ProRule annotationAdd BLAST22
DNA bindingi202 – 225H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU19050-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YobQ
Gene namesi
Name:yobQ
Ordered Locus Names:BSU19050
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003650211 – 241Uncharacterized HTH-type transcriptional regulator YobQAdd BLAST241

Proteomic databases

PaxDbiO34901.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100010521.

Structurei

3D structure databases

ProteinModelPortaliO34901.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini137 – 235HTH araC/xylS-typePROSITE-ProRule annotationAdd BLAST99

Sequence similaritiesi

Contains 1 HTH araC/xylS-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105FTV. Bacteria.
ENOG411250N. LUCA.
HOGENOMiHOG000262640.
InParanoidiO34901.
OMAiSIGRNEC.
PhylomeDBiO34901.

Family and domain databases

Gene3Di1.10.10.60. 2 hits.
2.60.120.10. 1 hit.
InterProiIPR013096. Cupin_2.
IPR009057. Homeodomain-like.
IPR018060. HTH_AraC.
IPR018062. HTH_AraC-typ_CS.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF07883. Cupin_2. 1 hit.
PF12833. HTH_18. 1 hit.
[Graphical view]
SMARTiSM00342. HTH_ARAC. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 2 hits.
SSF51182. SSF51182. 1 hit.
PROSITEiPS00041. HTH_ARAC_FAMILY_1. 1 hit.
PS01124. HTH_ARAC_FAMILY_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O34901-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLMDSLQEII CEKRTYTRLY HSHKHAYSQF LFPLEGSIDL ETEGRQVKLN
60 70 80 90 100
PDHFLYIPPQ CEHRFRSIGR NECLVLDVPL HAMKIDEYRA GSGIEAALDP
110 120 130 140 150
FWSSIRYLLT EEAKAGTANS LHMLVQYIKE KLQSHSYASI AYIHSHLFER
160 170 180 190 200
LTIKKLAEIE HYHPAYYSSW FKKQTGKSPQ NYIADLRLEE AKRMLMERNE
210 220 230 240
TLTVVSEALG FQNLSSFTRW FTKSTGMPPR LYRNTLYSDK K
Length:241
Mass (Da):28,259
Last modified:January 1, 1998 - v1
Checksum:i496566BF2FD0EFBB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF027868 Genomic DNA. Translation: AAB84467.1.
AL009126 Genomic DNA. Translation: CAB13797.1.
PIRiG69899.
RefSeqiNP_389786.1. NC_000964.3.
WP_010886529.1. NC_000964.3.

Genome annotation databases

EnsemblBacteriaiCAB13797; CAB13797; BSU19050.
GeneIDi939637.
KEGGibsu:BSU19050.
PATRICi18975655. VBIBacSub10457_2018.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF027868 Genomic DNA. Translation: AAB84467.1.
AL009126 Genomic DNA. Translation: CAB13797.1.
PIRiG69899.
RefSeqiNP_389786.1. NC_000964.3.
WP_010886529.1. NC_000964.3.

3D structure databases

ProteinModelPortaliO34901.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100010521.

Proteomic databases

PaxDbiO34901.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13797; CAB13797; BSU19050.
GeneIDi939637.
KEGGibsu:BSU19050.
PATRICi18975655. VBIBacSub10457_2018.

Phylogenomic databases

eggNOGiENOG4105FTV. Bacteria.
ENOG411250N. LUCA.
HOGENOMiHOG000262640.
InParanoidiO34901.
OMAiSIGRNEC.
PhylomeDBiO34901.

Enzyme and pathway databases

BioCyciBSUB:BSU19050-MONOMER.

Family and domain databases

Gene3Di1.10.10.60. 2 hits.
2.60.120.10. 1 hit.
InterProiIPR013096. Cupin_2.
IPR009057. Homeodomain-like.
IPR018060. HTH_AraC.
IPR018062. HTH_AraC-typ_CS.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF07883. Cupin_2. 1 hit.
PF12833. HTH_18. 1 hit.
[Graphical view]
SMARTiSM00342. HTH_ARAC. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 2 hits.
SSF51182. SSF51182. 1 hit.
PROSITEiPS00041. HTH_ARAC_FAMILY_1. 1 hit.
PS01124. HTH_ARAC_FAMILY_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYOBQ_BACSU
AccessioniPrimary (citable) accession number: O34901
Secondary accession number(s): Q796D8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 3, 2009
Last sequence update: January 1, 1998
Last modified: October 5, 2016
This is version 110 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.