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O34819 (PEL1_BACSU) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 66. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Pectin lyase
Short name=PNL
EC=4.2.2.10
Gene names
Name:pelB
Ordered Locus Names:BSU18650
OrganismBacillus subtilis
Taxonomic identifier1423 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus

Protein attributes

Sequence length345 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the depolymerization of pectins of methyl esterification degree from 13 to 75%, with an endo mode of action. Can not degrade polygalacturonate By similarity.

Catalytic activity

Eliminative cleavage of (1->4)-alpha-D-galacturonan methyl ester to give oligosaccharides with 4-deoxy-6-O-methyl-alpha-D-galact-4-enuronosyl groups at their non-reducing ends.

Subcellular location

Secreted By similarity.

Sequence similarities

Belongs to the polysaccharide lyase 1 family.

Ontologies

Keywords
   Cellular componentSecreted
   DomainSignal
   Molecular functionLyase
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular componentextracellular region

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionpectin lyase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2424 By similarity
Chain25 – 345321Pectin lyase
PRO_0000367323

Sites

Active site2341 Potential

Sequences

Sequence LengthMass (Da)Tools
O34819 [UniParc].

Last modified January 1, 1998. Version 1.
Checksum: E84A968D886F5A5D

FASTA34538,108
        10         20         30         40         50         60 
MKRLCLWFTV FSLFLVLLPG KALGAVDFPN TSTNGLLGFA GNAKNEKGIS KTGTTGGKNG 

        70         80         90        100        110        120 
QIVYIQSVND LKTHLGGSTP KILVLQNDLS ASAKTTVTIG SNKTLVGSYA KKTLKNIYLT 

       130        140        150        160        170        180 
TSSAFGNVIF QNLTFEHSPQ INGNNDIQLY LDSGMNYWID HVTFSGHSYN ASGSDLDKLV 

       190        200        210        220        230        240 
YIGKSADYIT ISNSKFANHK YGLILGYPDD SQHQYDGYPH MTIANNYFEN LYVRGPGLMR 

       250        260        270        280        290        300 
YGYFHVKNNY SNNFNQAITI ATKAKIYSEY NYFGKGSEKG GILDDKGTGY FKDIGSYPSL 

       310        320        330        340 
NKQTSPLTSW NPGSNYSYRV QTPEYTKEFV TKYAGSQSTT LVFGY

« Hide

References

« Hide 'large scale' references
[1]"Sequence analysis of the Bacillus subtilis chromosome region between the terC and odhAB loci cloned in a yeast artificial chromosome."
Lapidus A., Galleron N., Sorokin A., Ehrlich S.D.
Submitted (OCT-1997) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. expand/collapse author list , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
Nature 390:249-256(1997) [PubMed: 9384377] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 168.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AF027868 Genomic DNA. Translation: AAB84422.1.
AL009126 Genomic DNA. Translation: CAB13757.1.
PIRE69674.
RefSeqNP_389746.1. NC_000964.3.

3D structure databases

HSSPHSSP built from PDB template 1BN8 based on UniProtKB P39116.
ProteinModelPortalO34819.
SMRO34819. Positions 36-339.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBBACT00000002973; EBBACP00000002973; EBBACG00000002967.
GeneID940111.
GenomeReviewsGene locus BSU18650 in contig AL009126_GR.
KEGGbsu:BSU18650.
NMPDRfig|224308.1.peg.1868.
PATRIC18975571. VBIBacSub10457_1976.

Organism-specific databases

GenoListBSU18650. [Micado]

Phylogenomic databases

GeneTreeEBGT00050000000877.
HOGENOMHBG338481.
OMALMRYGYF.
PhylomeDBO34819.
ProtClustDBCLSK887387.

Enzyme and pathway databases

BioCycBSUB:BSU18650-MONOMER.

Family and domain databases

InterProIPR002022. Amb_allergen.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
Gene3DG3DSA:2.160.20.10. Pectin_lyas_fold. 1 hit.
KOK01732.
PfamPF00544. Pec_lyase_C. 1 hit.
[Graphical view]
SMARTSM00656. Amb_all. 1 hit.
[Graphical view]
SUPFAMSSF51126. Pectin_lyas_like. 1 hit.
ProtoNetSearch...

Entry information

Entry namePEL1_BACSU
AccessionPrimary (citable) accession number: O34819
Secondary accession number(s): Q796F4
Entry history
Integrated into UniProtKB/Swiss-Prot: March 24, 2009
Last sequence update: January 1, 1998
Last modified: January 25, 2012
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

SIMILARITY comments

Index of protein domains and families

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