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Protein

HTH-type transcriptional repressor YvoA

Gene

yvoA

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Acts as a weak repressor of yflG expression.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi37 – 56H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Repressor

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU35030-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional repressor YvoA
Gene namesi
Name:yvoA
Ordered Locus Names:BSU35030
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Pathology & Biotechi

Disruption phenotypei

Induces a slight but consistent increase in YflG activity.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003607281 – 243HTH-type transcriptional repressor YvoAAdd BLAST243

Proteomic databases

PaxDbiO34817.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100018961.

Structurei

Secondary structure

1243
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi7 – 9Combined sources3
Helixi11 – 24Combined sources14
Beta strandi30 – 32Combined sources3
Helixi37 – 44Combined sources8
Helixi48 – 60Combined sources13
Beta strandi63 – 67Combined sources5
Turni68 – 70Combined sources3
Beta strandi71 – 74Combined sources4
Beta strandi79 – 82Combined sources4
Helixi89 – 95Combined sources7
Beta strandi100 – 111Combined sources12
Helixi114 – 120Combined sources7
Beta strandi127 – 137Combined sources11
Beta strandi140 – 150Combined sources11
Helixi151 – 153Combined sources3
Helixi159 – 162Combined sources4
Helixi166 – 174Combined sources9
Beta strandi178 – 189Combined sources12
Helixi192 – 198Combined sources7
Beta strandi205 – 215Combined sources11
Beta strandi220 – 229Combined sources10
Helixi230 – 232Combined sources3
Beta strandi233 – 240Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2WV0X-ray2.40A/B/C/D/E/F/G/H/I/J1-243[»]
4U0VX-ray2.05A/B1-243[»]
4U0WX-ray2.00A/B1-243[»]
4U0YX-ray1.91A/B/C/D1-75[»]
4WWCX-ray2.90A/B1-243[»]
ProteinModelPortaliO34817.
SMRiO34817.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO34817.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 77HTH gntR-typePROSITE-ProRule annotationAdd BLAST69

Sequence similaritiesi

Contains 1 HTH gntR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105FDP. Bacteria.
COG2188. LUCA.
HOGENOMiHOG000228717.
InParanoidiO34817.
KOiK03710.
OMAiPMAIESS.
PhylomeDBiO34817.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
[Graphical view]
PRINTSiPR00035. HTHGNTR.
SMARTiSM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O34817-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNINKQSPIP IYYQIMEQLK TQIKNGELQP DMPLPSEREY AEQFGISRMT
60 70 80 90 100
VRQALSNLVN EGLLYRLKGR GTFVSKPKME QALQGLTSFT EDMKSRGMTP
110 120 130 140 150
GSRLIDYQLI DSTEELAAIL GCGHPSSIHK ITRVRLANDI PMAIESSHIP
160 170 180 190 200
FELAGELNES HFQSSIYDHI ERYNSIPISR AKQELEPSAA TTEEANILGI
210 220 230 240
QKGAPVLLIK RTTYLQNGTA FEHAKSVYRG DRYTFVHYMD RLS
Length:243
Mass (Da):27,507
Last modified:January 1, 1998 - v1
Checksum:i7E8B79E48EA863B7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF017113 Genomic DNA. Translation: AAC67283.1.
AL009126 Genomic DNA. Translation: CAB15508.1.
PIRiD70044.
RefSeqiNP_391383.1. NC_000964.3.
WP_003228089.1. NZ_JNCM01000033.1.

Genome annotation databases

EnsemblBacteriaiCAB15508; CAB15508; BSU35030.
GeneIDi936626.
KEGGibsu:BSU35030.
PATRICi18979012. VBIBacSub10457_3668.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF017113 Genomic DNA. Translation: AAC67283.1.
AL009126 Genomic DNA. Translation: CAB15508.1.
PIRiD70044.
RefSeqiNP_391383.1. NC_000964.3.
WP_003228089.1. NZ_JNCM01000033.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2WV0X-ray2.40A/B/C/D/E/F/G/H/I/J1-243[»]
4U0VX-ray2.05A/B1-243[»]
4U0WX-ray2.00A/B1-243[»]
4U0YX-ray1.91A/B/C/D1-75[»]
4WWCX-ray2.90A/B1-243[»]
ProteinModelPortaliO34817.
SMRiO34817.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100018961.

Proteomic databases

PaxDbiO34817.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB15508; CAB15508; BSU35030.
GeneIDi936626.
KEGGibsu:BSU35030.
PATRICi18979012. VBIBacSub10457_3668.

Phylogenomic databases

eggNOGiENOG4105FDP. Bacteria.
COG2188. LUCA.
HOGENOMiHOG000228717.
InParanoidiO34817.
KOiK03710.
OMAiPMAIESS.
PhylomeDBiO34817.

Enzyme and pathway databases

BioCyciBSUB:BSU35030-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO34817.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
[Graphical view]
PRINTSiPR00035. HTHGNTR.
SMARTiSM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYVOA_BACSU
AccessioniPrimary (citable) accession number: O34817
Secondary accession number(s): Q795E9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 1, 1998
Last modified: November 2, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.