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Protein

HTH-type transcriptional repressor YvoA

Gene

yvoA

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Acts as a weak repressor of yflG expression.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi37 – 56H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding, Repressor
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciBSUB:BSU35030-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional repressor YvoA
Gene namesi
Name:yvoA
Ordered Locus Names:BSU35030
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Pathology & Biotechi

Disruption phenotypei

Induces a slight but consistent increase in YflG activity.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003607281 – 243HTH-type transcriptional repressor YvoAAdd BLAST243

Proteomic databases

PaxDbiO34817
PRIDEiO34817

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100018961

Structurei

Secondary structure

1243
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi7 – 9Combined sources3
Helixi11 – 24Combined sources14
Beta strandi30 – 32Combined sources3
Helixi37 – 44Combined sources8
Helixi48 – 60Combined sources13
Beta strandi63 – 67Combined sources5
Turni68 – 70Combined sources3
Beta strandi71 – 74Combined sources4
Beta strandi79 – 82Combined sources4
Helixi89 – 95Combined sources7
Beta strandi100 – 111Combined sources12
Helixi114 – 120Combined sources7
Beta strandi127 – 137Combined sources11
Beta strandi140 – 150Combined sources11
Helixi151 – 153Combined sources3
Helixi159 – 162Combined sources4
Helixi166 – 174Combined sources9
Beta strandi178 – 189Combined sources12
Helixi192 – 198Combined sources7
Beta strandi205 – 215Combined sources11
Beta strandi220 – 229Combined sources10
Helixi230 – 232Combined sources3
Beta strandi233 – 240Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2WV0X-ray2.40A/B/C/D/E/F/G/H/I/J1-243[»]
4U0VX-ray2.05A/B1-243[»]
4U0WX-ray2.00A/B1-243[»]
4U0YX-ray1.91A/B/C/D1-75[»]
4WWCX-ray2.90A/B1-243[»]
ProteinModelPortaliO34817
SMRiO34817
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO34817

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 77HTH gntR-typePROSITE-ProRule annotationAdd BLAST69

Phylogenomic databases

eggNOGiENOG4105FDP Bacteria
COG2188 LUCA
HOGENOMiHOG000228717
InParanoidiO34817
KOiK03710
OMAiLIVHFEN
PhylomeDBiO34817

Family and domain databases

CDDicd07377 WHTH_GntR, 1 hit
Gene3Di1.10.10.10, 1 hit
3.40.1410.10, 1 hit
InterProiView protein in InterPro
IPR028978 Chorismate_lyase_/UTRA_dom_sf
IPR000524 Tscrpt_reg_HTH_GntR
IPR011663 UTRA
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00392 GntR, 1 hit
PF07702 UTRA, 1 hit
PRINTSiPR00035 HTHGNTR
SMARTiView protein in SMART
SM00345 HTH_GNTR, 1 hit
SM00866 UTRA, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
SSF64288 SSF64288, 1 hit
PROSITEiView protein in PROSITE
PS50949 HTH_GNTR, 1 hit

Sequencei

Sequence statusi: Complete.

O34817-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNINKQSPIP IYYQIMEQLK TQIKNGELQP DMPLPSEREY AEQFGISRMT
60 70 80 90 100
VRQALSNLVN EGLLYRLKGR GTFVSKPKME QALQGLTSFT EDMKSRGMTP
110 120 130 140 150
GSRLIDYQLI DSTEELAAIL GCGHPSSIHK ITRVRLANDI PMAIESSHIP
160 170 180 190 200
FELAGELNES HFQSSIYDHI ERYNSIPISR AKQELEPSAA TTEEANILGI
210 220 230 240
QKGAPVLLIK RTTYLQNGTA FEHAKSVYRG DRYTFVHYMD RLS
Length:243
Mass (Da):27,507
Last modified:January 1, 1998 - v1
Checksum:i7E8B79E48EA863B7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF017113 Genomic DNA Translation: AAC67283.1
AL009126 Genomic DNA Translation: CAB15508.1
PIRiD70044
RefSeqiNP_391383.1, NC_000964.3
WP_003228089.1, NZ_JNCM01000033.1

Genome annotation databases

EnsemblBacteriaiCAB15508; CAB15508; BSU35030
GeneIDi936626
KEGGibsu:BSU35030
PATRICifig|224308.179.peg.3791

Similar proteinsi

Entry informationi

Entry nameiYVOA_BACSU
AccessioniPrimary (citable) accession number: O34817
Secondary accession number(s): Q795E9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 1, 1998
Last modified: May 23, 2018
This is version 113 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

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