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Protein

Oxalate decarboxylase OxdD

Gene

oxdD

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Converts oxalate to formate and CO2.

Catalytic activityi

Oxalate = formate + CO2.

Cofactori

Mn2+By similarityNote: Binds 2 manganese ions per subunit.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi104Manganese 1By similarity1
Metal bindingi106Manganese 1By similarity1
Metal bindingi110Manganese 1By similarity1
Metal bindingi149Manganese 1By similarity1
Metal bindingi281Manganese 2By similarity1
Metal bindingi283Manganese 2By similarity1
Metal bindingi288Manganese 2By similarity1
Metal bindingi327Manganese 2By similarity1
Active sitei341Proton donorBy similarity1

GO - Molecular functioni

  • metal ion binding Source: UniProtKB-KW
  • nutrient reservoir activity Source: InterPro
  • oxalate decarboxylase activity Source: UniProtKB

GO - Biological processi

  • oxalate metabolic process Source: UniProtKB

Keywordsi

Molecular functionDecarboxylase, Lyase
LigandManganese, Metal-binding

Enzyme and pathway databases

BioCyciBSUB:BSU18670-MONOMER.
BRENDAi4.1.1.2. 658.

Names & Taxonomyi

Protein namesi
Recommended name:
Oxalate decarboxylase OxdD (EC:4.1.1.2)
Gene namesi
Name:oxdD
Synonyms:yoaN
Ordered Locus Names:BSU18670
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000581071 – 392Oxalate decarboxylase OxdDAdd BLAST392

Proteomic databases

PaxDbiO34767.

Interactioni

Protein-protein interaction databases

IntActiO34767. 1 interactor.
STRINGi224308.Bsubs1_010100010291.

Structurei

3D structure databases

ProteinModelPortaliO34767.
SMRiO34767.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To B.subtilis OxdC.Curated

Phylogenomic databases

eggNOGiENOG4105F0F. Bacteria.
COG2140. LUCA.
HOGENOMiHOG000200624.
InParanoidiO34767.
KOiK01569.
OMAiHPNNDEW.
PhylomeDBiO34767.

Family and domain databases

Gene3Di2.60.120.10. 2 hits.
InterProiView protein in InterPro
IPR017774. Bicupin_oxalate_deCO2ase/Oxase.
IPR006045. Cupin_1.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
PfamiView protein in Pfam
PF00190. Cupin_1. 2 hits.
SMARTiView protein in SMART
SM00835. Cupin_1. 2 hits.
SUPFAMiSSF51182. SSF51182. 1 hit.
TIGRFAMsiTIGR03404. bicupin_oxalic. 1 hit.

Sequencei

Sequence statusi: Complete.

O34767-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLLEQQPINH EDRNVPQPIR SDGAGAIDTG PRNIIRDIQN PNIFVPPVTD
60 70 80 90 100
EGMIPNLRFS FSDAPMKLDH GGWSREITVR QLPISTAIAG VNMSLTAGGV
110 120 130 140 150
RELHWHKQAE WAYMLLGRAR ITAVDQDGRN FIADVGPGDL WYFPAGIPHS
160 170 180 190 200
IQGLEHCEFL LVFDDGNFSE FSTLTISDWL AHTPKDVLSA NFGVPENAFN
210 220 230 240 250
SLPSEQVYIY QGNVPGSVAS EDIQSPYGKV PMTFKHELLN QPPIQMPGGS
260 270 280 290 300
VRIVDSSNFP ISKTIAAALV QIEPGAMREL HWHPNSDEWQ YYLTGQGRMT
310 320 330 340 350
VFIGNGTART FDYRAGDVGY VPSNAGHYIQ NTGTETLWFL EMFKSNRYAD
360 370 380 390
VSLNQWMALT PKELVQSNLN AGSVMLDSLR KKKVPVVKYP GT
Length:392
Mass (Da):43,554
Last modified:January 1, 1998 - v1
Checksum:i54642A8AD727DC30
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF027868 Genomic DNA. Translation: AAB84450.1.
AL009126 Genomic DNA. Translation: CAB13759.1.
PIRiG69896.
RefSeqiNP_389748.1. NC_000964.3.
WP_003231409.1. NZ_JNCM01000036.1.

Genome annotation databases

EnsemblBacteriaiCAB13759; CAB13759; BSU18670.
GeneIDi940006.
KEGGibsu:BSU18670.
PATRICifig|224308.179.peg.2036.

Similar proteinsi

Entry informationi

Entry nameiOXDD_BACSU
AccessioniPrimary (citable) accession number: O34767
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 6, 2002
Last sequence update: January 1, 1998
Last modified: June 7, 2017
This is version 112 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList