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Protein

HTH-type transcriptional repressor YtrA

Gene

ytrA

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi38 – 57H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Repressor

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU30460-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional repressor YtrA
Gene namesi
Name:ytrA
Ordered Locus Names:BSU30460
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003607301 – 130HTH-type transcriptional repressor YtrAAdd BLAST130

Proteomic databases

PaxDbiO34712.
PRIDEiO34712.

Expressioni

Developmental stagei

Expressed early in the stationary phase.1 Publication

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100016581.

Structurei

3D structure databases

ProteinModelPortaliO34712.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini10 – 78HTH gntR-typePROSITE-ProRule annotationAdd BLAST69

Sequence similaritiesi

Contains 1 HTH gntR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410811P. Bacteria.
COG1725. LUCA.
HOGENOMiHOG000259573.
InParanoidiO34712.
KOiK07979.
OMAiERDGWIY.
PhylomeDBiO34712.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiIPR000524. Tscrpt_reg_HTH_GntR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
[Graphical view]
SMARTiSM00345. HTH_GNTR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O34712-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIQIDPRSST PIYEQIIQQM KELCLKGIMK PGDKLPSVRE LATIIIANPN
60 70 80 90 100
TVSKAYKELE REGIIETLRG RGTYISENAK TTLVEGKMTM IKEQLKQLII
110 120 130
DAHYAGVELE KLHEWIKEIS ADVKGGKKND
Length:130
Mass (Da):14,694
Last modified:January 1, 1998 - v1
Checksum:i16464E57E99871A9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF008220 Genomic DNA. Translation: AAC00247.1.
AL009126 Genomic DNA. Translation: CAB15024.1.
PIRiG69999.
RefSeqiNP_390924.1. NC_000964.3.
WP_003229121.1. NZ_JNCM01000036.1.

Genome annotation databases

EnsemblBacteriaiCAB15024; CAB15024; BSU30460.
GeneIDi937244.
KEGGibsu:BSU30460.
PATRICi18977994. VBIBacSub10457_3185.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF008220 Genomic DNA. Translation: AAC00247.1.
AL009126 Genomic DNA. Translation: CAB15024.1.
PIRiG69999.
RefSeqiNP_390924.1. NC_000964.3.
WP_003229121.1. NZ_JNCM01000036.1.

3D structure databases

ProteinModelPortaliO34712.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100016581.

Proteomic databases

PaxDbiO34712.
PRIDEiO34712.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB15024; CAB15024; BSU30460.
GeneIDi937244.
KEGGibsu:BSU30460.
PATRICi18977994. VBIBacSub10457_3185.

Phylogenomic databases

eggNOGiENOG410811P. Bacteria.
COG1725. LUCA.
HOGENOMiHOG000259573.
InParanoidiO34712.
KOiK07979.
OMAiERDGWIY.
PhylomeDBiO34712.

Enzyme and pathway databases

BioCyciBSUB:BSU30460-MONOMER.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiIPR000524. Tscrpt_reg_HTH_GntR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
[Graphical view]
SMARTiSM00345. HTH_GNTR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYTRA_BACSU
AccessioniPrimary (citable) accession number: O34712
Secondary accession number(s): Q795Q0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 1, 1998
Last modified: October 5, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.