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O34659

- YBBR_BACSU

UniProt

O34659 - YBBR_BACSU

Protein

YbbR-like domain-containing protein YbbR

Gene

ybbR

Organism
Bacillus subtilis (strain 168)
Status
Reviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 58 (01 Oct 2014)
      Sequence version 2 (05 May 2009)
      Previous versions | rss
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    Functioni

    Enzyme and pathway databases

    BioCyciBSUB:BSU01760-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    YbbR-like domain-containing protein YbbR
    Gene namesi
    Name:ybbR
    Ordered Locus Names:BSU01760
    OrganismiBacillus subtilis (strain 168)
    Taxonomic identifieri224308 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000001570: Chromosome

    Organism-specific databases

    GenoListiBSU01760.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 3030Sequence AnalysisAdd
    BLAST
    Chaini31 – 483453YbbR-like domain-containing protein YbbRPRO_0000384386Add
    BLAST

    Proteomic databases

    PaxDbiO34659.

    Interactioni

    Protein-protein interaction databases

    STRINGi224308.BSU01760.

    Structurei

    3D structure databases

    ProteinModelPortaliO34659.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini55 – 13581YbbR-like 1Add
    BLAST
    Domaini143 – 22886YbbR-like 2Add
    BLAST
    Domaini237 – 31680YbbR-like 3Add
    BLAST
    Domaini329 – 39466YbbR-like 4Add
    BLAST

    Sequence similaritiesi

    Contains 4 YbbR-like domains.Curated

    Keywords - Domaini

    Repeat, Signal

    Phylogenomic databases

    eggNOGiCOG4856.
    HOGENOMiHOG000054579.
    OrthoDBiEOG6TFCSK.
    PhylomeDBiO34659.

    Family and domain databases

    InterProiIPR012505. YbbR.
    [Graphical view]
    PfamiPF07949. YbbR. 4 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    O34659-1 [UniParc]FASTAAdd to Basket

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    MDKFLNNRWA VKIIALLFAL LLYVAVNSNQ APTPKKPGES FFPTSTTDEA    50
    TLTDIPVKAY YDDENYVVTG VPQTVNVTIK GSTSAVKKAR QTKNFEIYAD 100
    MEHLKTGTHK VELKAKNVSD GLTISINPSV TTVTIQERTT KSFPVEVEYY 150
    NKSKMKKGYS PEQPIVSPKN VQITGSKNVI DNISLVKASV NLENADETIE 200
    KEAKVTVYDK DGNALPVDVE PSVIKITVPV TSPSKKVPFK IERTGSLPDG 250
    VSIANIESSP SEVTVYGSQD VLDSLEFIDG VSLDLSKINK DSDIEADIPL 300
    PDGVKKISPS KVTLHIEVDS EADQKFENVP IKTVGLSSSQ NIEFLDPESQ 350
    AIDVTAKGSP TNINKLKKSD IELYVNVSDL EDGEHSVKLE VNGPQNVTWS 400
    LGRKNAKIKL TSKKSNTSTN DNSSNTSGNQ DTDKQTNDQK NNQQEDTKNT 450
    DKNNNDQNQD GNKDQNQDQD EDESTANSQS SSE 483
    Length:483
    Mass (Da):52,907
    Last modified:May 5, 2009 - v2
    Checksum:iC591A9A3106D7BC2
    GO

    Sequence cautioni

    The sequence BAA33068.1 differs from that shown. Reason: Frameshift at several positions.

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti186 – 1861V → H in BAA33068. 1 PublicationCurated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB006424 Genomic DNA. Translation: BAA33068.1. Frameshift.
    AL009126 Genomic DNA. Translation: CAB11952.2.
    RefSeqiNP_388057.2. NC_000964.3.

    Genome annotation databases

    EnsemblBacteriaiCAB11952; CAB11952; BSU01760.
    GeneIDi938867.
    KEGGibsu:BSU01760.
    PATRICi18971905. VBIBacSub10457_0181.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB006424 Genomic DNA. Translation: BAA33068.1 . Frameshift.
    AL009126 Genomic DNA. Translation: CAB11952.2 .
    RefSeqi NP_388057.2. NC_000964.3.

    3D structure databases

    ProteinModelPortali O34659.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 224308.BSU01760.

    Proteomic databases

    PaxDbi O34659.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAB11952 ; CAB11952 ; BSU01760 .
    GeneIDi 938867.
    KEGGi bsu:BSU01760.
    PATRICi 18971905. VBIBacSub10457_0181.

    Organism-specific databases

    GenoListi BSU01760.

    Phylogenomic databases

    eggNOGi COG4856.
    HOGENOMi HOG000054579.
    OrthoDBi EOG6TFCSK.
    PhylomeDBi O34659.

    Enzyme and pathway databases

    BioCyci BSUB:BSU01760-MONOMER.

    Family and domain databases

    InterProi IPR012505. YbbR.
    [Graphical view ]
    Pfami PF07949. YbbR. 4 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence analysis of the 70kb region between 17 and 23 degree of the Bacillus subtilis chromosome."
      Haga K., Liu H., Yasumoto K., Takahashi H., Yoshikawa H.
      Submitted (JUL-1997) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: 168.
    2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
      Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
      , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
      Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 168.

    Entry informationi

    Entry nameiYBBR_BACSU
    AccessioniPrimary (citable) accession number: O34659
    Secondary accession number(s): O87088
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: September 22, 2009
    Last sequence update: May 5, 2009
    Last modified: October 1, 2014
    This is version 58 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Bacillus subtilis
      Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3