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O34659 (YBBR_BACSU) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
YbbR-like domain-containing protein YbbR
Gene names
Name:ybbR
Ordered Locus Names:BSU01760
OrganismBacillus subtilis (strain 168) [Reference proteome] [HAMAP]
Taxonomic identifier224308 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length483 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 4 YbbR-like domains.

Sequence caution

The sequence BAA33068.1 differs from that shown. Reason: Frameshift at several positions.

Ontologies

Keywords
   DomainRepeat
Signal
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3030 Potential
Chain31 – 483453YbbR-like domain-containing protein YbbR
PRO_0000384386

Regions

Domain55 – 13581YbbR-like 1
Domain143 – 22886YbbR-like 2
Domain237 – 31680YbbR-like 3
Domain329 – 39466YbbR-like 4

Experimental info

Sequence conflict1861V → H in BAA33068. Ref.1

Sequences

Sequence LengthMass (Da)Tools
O34659 [UniParc].

Last modified May 5, 2009. Version 2.
Checksum: C591A9A3106D7BC2

FASTA48352,907
        10         20         30         40         50         60 
MDKFLNNRWA VKIIALLFAL LLYVAVNSNQ APTPKKPGES FFPTSTTDEA TLTDIPVKAY 

        70         80         90        100        110        120 
YDDENYVVTG VPQTVNVTIK GSTSAVKKAR QTKNFEIYAD MEHLKTGTHK VELKAKNVSD 

       130        140        150        160        170        180 
GLTISINPSV TTVTIQERTT KSFPVEVEYY NKSKMKKGYS PEQPIVSPKN VQITGSKNVI 

       190        200        210        220        230        240 
DNISLVKASV NLENADETIE KEAKVTVYDK DGNALPVDVE PSVIKITVPV TSPSKKVPFK 

       250        260        270        280        290        300 
IERTGSLPDG VSIANIESSP SEVTVYGSQD VLDSLEFIDG VSLDLSKINK DSDIEADIPL 

       310        320        330        340        350        360 
PDGVKKISPS KVTLHIEVDS EADQKFENVP IKTVGLSSSQ NIEFLDPESQ AIDVTAKGSP 

       370        380        390        400        410        420 
TNINKLKKSD IELYVNVSDL EDGEHSVKLE VNGPQNVTWS LGRKNAKIKL TSKKSNTSTN 

       430        440        450        460        470        480 
DNSSNTSGNQ DTDKQTNDQK NNQQEDTKNT DKNNNDQNQD GNKDQNQDQD EDESTANSQS 


SSE 

« Hide

References

« Hide 'large scale' references
[1]"Sequence analysis of the 70kb region between 17 and 23 degree of the Bacillus subtilis chromosome."
Haga K., Liu H., Yasumoto K., Takahashi H., Yoshikawa H.
Submitted (JUL-1997) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 168.
[2]"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. expand/collapse author list , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 168.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AB006424 Genomic DNA. Translation: BAA33068.1. Frameshift.
AL009126 Genomic DNA. Translation: CAB11952.2.
RefSeqNP_388057.2. NC_000964.3.

3D structure databases

ProteinModelPortalO34659.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING224308.BSU01760.

Proteomic databases

PaxDbO34659.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAB11952; CAB11952; BSU01760.
GeneID938867.
KEGGbsu:BSU01760.
PATRIC18971905. VBIBacSub10457_0181.

Organism-specific databases

GenoListBSU01760.

Phylogenomic databases

eggNOGCOG4856.
HOGENOMHOG000054579.
OrthoDBEOG6TFCSK.
PhylomeDBO34659.

Enzyme and pathway databases

BioCycBSUB:BSU01760-MONOMER.

Family and domain databases

InterProIPR012505. YbbR.
[Graphical view]
PfamPF07949. YbbR. 4 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYBBR_BACSU
AccessionPrimary (citable) accession number: O34659
Secondary accession number(s): O87088
Entry history
Integrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: May 5, 2009
Last modified: July 9, 2014
This is version 57 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList