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O34659

- YBBR_BACSU

UniProt

O34659 - YBBR_BACSU

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Protein
YbbR-like domain-containing protein YbbR
Gene
ybbR, BSU01760
Organism
Bacillus subtilis (strain 168)
Status
Reviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU01760-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
YbbR-like domain-containing protein YbbR
Gene namesi
Name:ybbR
Ordered Locus Names:BSU01760
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001570: Chromosome

Organism-specific databases

GenoListiBSU01760.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3030 Reviewed prediction
Add
BLAST
Chaini31 – 483453YbbR-like domain-containing protein YbbR
PRO_0000384386Add
BLAST

Proteomic databases

PaxDbiO34659.

Interactioni

Protein-protein interaction databases

STRINGi224308.BSU01760.

Structurei

3D structure databases

ProteinModelPortaliO34659.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini55 – 13581YbbR-like 1
Add
BLAST
Domaini143 – 22886YbbR-like 2
Add
BLAST
Domaini237 – 31680YbbR-like 3
Add
BLAST
Domaini329 – 39466YbbR-like 4
Add
BLAST

Sequence similaritiesi

Contains 4 YbbR-like domains.

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiCOG4856.
HOGENOMiHOG000054579.
OrthoDBiEOG6TFCSK.
PhylomeDBiO34659.

Family and domain databases

InterProiIPR012505. YbbR.
[Graphical view]
PfamiPF07949. YbbR. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O34659-1 [UniParc]FASTAAdd to Basket

« Hide

MDKFLNNRWA VKIIALLFAL LLYVAVNSNQ APTPKKPGES FFPTSTTDEA    50
TLTDIPVKAY YDDENYVVTG VPQTVNVTIK GSTSAVKKAR QTKNFEIYAD 100
MEHLKTGTHK VELKAKNVSD GLTISINPSV TTVTIQERTT KSFPVEVEYY 150
NKSKMKKGYS PEQPIVSPKN VQITGSKNVI DNISLVKASV NLENADETIE 200
KEAKVTVYDK DGNALPVDVE PSVIKITVPV TSPSKKVPFK IERTGSLPDG 250
VSIANIESSP SEVTVYGSQD VLDSLEFIDG VSLDLSKINK DSDIEADIPL 300
PDGVKKISPS KVTLHIEVDS EADQKFENVP IKTVGLSSSQ NIEFLDPESQ 350
AIDVTAKGSP TNINKLKKSD IELYVNVSDL EDGEHSVKLE VNGPQNVTWS 400
LGRKNAKIKL TSKKSNTSTN DNSSNTSGNQ DTDKQTNDQK NNQQEDTKNT 450
DKNNNDQNQD GNKDQNQDQD EDESTANSQS SSE 483
Length:483
Mass (Da):52,907
Last modified:May 5, 2009 - v2
Checksum:iC591A9A3106D7BC2
GO

Sequence cautioni

The sequence BAA33068.1 differs from that shown. Reason: Frameshift at several positions.

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti186 – 1861V → H in BAA33068. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB006424 Genomic DNA. Translation: BAA33068.1. Frameshift.
AL009126 Genomic DNA. Translation: CAB11952.2.
RefSeqiNP_388057.2. NC_000964.3.

Genome annotation databases

EnsemblBacteriaiCAB11952; CAB11952; BSU01760.
GeneIDi938867.
KEGGibsu:BSU01760.
PATRICi18971905. VBIBacSub10457_0181.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB006424 Genomic DNA. Translation: BAA33068.1 . Frameshift.
AL009126 Genomic DNA. Translation: CAB11952.2 .
RefSeqi NP_388057.2. NC_000964.3.

3D structure databases

ProteinModelPortali O34659.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 224308.BSU01760.

Proteomic databases

PaxDbi O34659.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAB11952 ; CAB11952 ; BSU01760 .
GeneIDi 938867.
KEGGi bsu:BSU01760.
PATRICi 18971905. VBIBacSub10457_0181.

Organism-specific databases

GenoListi BSU01760.

Phylogenomic databases

eggNOGi COG4856.
HOGENOMi HOG000054579.
OrthoDBi EOG6TFCSK.
PhylomeDBi O34659.

Enzyme and pathway databases

BioCyci BSUB:BSU01760-MONOMER.

Family and domain databases

InterProi IPR012505. YbbR.
[Graphical view ]
Pfami PF07949. YbbR. 4 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence analysis of the 70kb region between 17 and 23 degree of the Bacillus subtilis chromosome."
    Haga K., Liu H., Yasumoto K., Takahashi H., Yoshikawa H.
    Submitted (JUL-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiYBBR_BACSU
AccessioniPrimary (citable) accession number: O34659
Secondary accession number(s): O87088
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: May 5, 2009
Last modified: July 9, 2014
This is version 57 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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