O34659 (YBBR_BACSU) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
YbbR-like domain-containing protein YbbR

Gene names

Name:	ybbR
Ordered Locus Names:	BSU01760

Organism

Bacillus subtilis (strain 168) [Reference proteome] [HAMAP]

Taxonomic identifier

224308 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus › Bacillus subtilis group › Bacillus subtilis › Bacillus subtilis subsp. subtilis

Protein attributes

Sequence length	483 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities	Contains 4 YbbR-like domains.
Sequence caution	The sequence BAA33068.1 differs from that shown. Reason: Frameshift at several positions.

Ontologies

Keywords
Domain	Repeat Signal
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 30	30	Potential
	Chain	31 – 483	453	YbbR-like domain-containing protein YbbR		PRO_0000384386
Regions
	Domain	55 – 135	81	YbbR-like 1
	Domain	143 – 228	86	YbbR-like 2
	Domain	237 – 316	80	YbbR-like 3
	Domain	329 – 394	66	YbbR-like 4
Experimental info
	Sequence conflict	186	1	V → H in BAA33068. Ref.1

Sequences

	Sequence		Length	Mass (Da)
	O34659 [UniParc]. Last modified May 5, 2009. Version 2. Checksum: C591A9A3106D7BC2	FASTA	483	52,907
	10 20 30 40 50 60 MDKFLNNRWA VKIIALLFAL LLYVAVNSNQ APTPKKPGES FFPTSTTDEA TLTDIPVKAY 70 80 90 100 110 120 YDDENYVVTG VPQTVNVTIK GSTSAVKKAR QTKNFEIYAD MEHLKTGTHK VELKAKNVSD 130 140 150 160 170 180 GLTISINPSV TTVTIQERTT KSFPVEVEYY NKSKMKKGYS PEQPIVSPKN VQITGSKNVI 190 200 210 220 230 240 DNISLVKASV NLENADETIE KEAKVTVYDK DGNALPVDVE PSVIKITVPV TSPSKKVPFK 250 260 270 280 290 300 IERTGSLPDG VSIANIESSP SEVTVYGSQD VLDSLEFIDG VSLDLSKINK DSDIEADIPL 310 320 330 340 350 360 PDGVKKISPS KVTLHIEVDS EADQKFENVP IKTVGLSSSQ NIEFLDPESQ AIDVTAKGSP 370 380 390 400 410 420 TNINKLKKSD IELYVNVSDL EDGEHSVKLE VNGPQNVTWS LGRKNAKIKL TSKKSNTSTN 430 440 450 460 470 480 DNSSNTSGNQ DTDKQTNDQK NNQQEDTKNT DKNNNDQNQD GNKDQNQDQD EDESTANSQS SSE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence analysis of the 70kb region between 17 and 23 degree of the Bacillus subtilis chromosome." Haga K., Liu H., Yasumoto K., Takahashi H., Yoshikawa H. Submitted (JUL-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: 168.
[2]	"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis." Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A. Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 168.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AB006424 Genomic DNA. Translation: BAA33068.1. Frameshift. AL009126 Genomic DNA. Translation: CAB11952.2.
RefSeq	NP_388057.2. NC_000964.3.
3D structure databases
ProteinModelPortal	O34659.
ModBase	Search...
Protein-protein interaction databases
STRING	224308.BSU01760.
Proteomic databases
PaxDb	O34659.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAB11952; CAB11952; BSU01760.
GeneID	938867.
KEGG	bsu:BSU01760.
PATRIC	18971905. VBIBacSub10457_0181.
Organism-specific databases
GenoList	BSU01760.
Phylogenomic databases
eggNOG	COG4856.
HOGENOM	HOG000054579.
ProtClustDB	CLSK886591.
Enzyme and pathway databases
BioCyc	BSUB:BSU01760-MONOMER.
Family and domain databases
InterPro	IPR012505. YbbR. [Graphical view]
Pfam	PF07949. YbbR. 4 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

YBBR_BACSU

Accession

Primary (citable) accession number: O34659
Secondary accession number(s): O87088

Entry history

Integrated into UniProtKB/Swiss-Prot:	September 22, 2009
Last sequence update:	May 5, 2009
Last modified:	May 1, 2013
This is version 54 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program