Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Putative pre-16S rRNA nuclease

Gene

yrrK

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Nuclease

Keywords - Biological processi

Ribosome biogenesis

Enzyme and pathway databases

BioCyciBSUB:BSU27390-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pre-16S rRNA nucleaseUniRule annotation (EC:3.1.-.-UniRule annotation)
Gene namesi
Name:yrrK
Synonyms:yqgf1 Publication
Ordered Locus Names:BSU27390
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

Pathology & Biotechi

Disruption phenotypei

Not essential, it can be disrupted.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 138138Putative pre-16S rRNA nucleasePRO_0000172023Add
BLAST

Proteomic databases

PaxDbiO34634.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100014961.

Structurei

Secondary structure

1
138
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi2 – 87Combined sources
Beta strandi10 – 189Combined sources
Beta strandi22 – 3211Combined sources
Helixi35 – 373Combined sources
Helixi42 – 498Combined sources
Beta strandi52 – 609Combined sources
Helixi71 – 8717Combined sources
Beta strandi91 – 944Combined sources
Helixi100 – 10910Combined sources
Helixi114 – 13724Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VHXX-ray1.96A/B2-138[»]
ProteinModelPortaliO34634.
SMRiO34634. Positions 1-138.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO34634.

Family & Domainsi

Sequence similaritiesi

Belongs to the YqgF nuclease family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108Z08. Bacteria.
COG0816. LUCA.
HOGENOMiHOG000016953.
InParanoidiO34634.
KOiK07447.
OMAiPMGWTAQ.
PhylomeDBiO34634.

Family and domain databases

Gene3Di3.30.420.140. 1 hit.
HAMAPiMF_00651. Nuclease_YqgF. 1 hit.
InterProiIPR012337. RNaseH-like_dom.
IPR005227. YqgF.
IPR006641. YqgF/RNaseH-like_dom.
[Graphical view]
PfamiPF03652. RuvX. 1 hit.
[Graphical view]
SMARTiSM00732. YqgFc. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
TIGRFAMsiTIGR00250. RNAse_H_YqgF. 1 hit.

Sequencei

Sequence statusi: Complete.

O34634-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRILGLDLGT KTLGVALSDE MGWTAQGIET IKINEAEGDY GLSRLSELIK
60 70 80 90 100
DYTIDKIVLG FPKNMNGTVG PRGEASQTFA KVLETTYNVP VVLWDERLTT
110 120 130
MAAEKMLIAA DVSRQKRKKV IDKMAAVMIL QGYLDSLN
Length:138
Mass (Da):15,210
Last modified:January 1, 1998 - v1
Checksum:i39F3EA8A6B3B1C06
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB14681.1.
PIRiD69979.
RefSeqiNP_390617.1. NC_000964.3.
WP_003229795.1. NZ_JNCM01000036.1.

Genome annotation databases

EnsemblBacteriaiCAB14681; CAB14681; BSU27390.
GeneIDi937357.
KEGGibsu:BSU27390.
PATRICi18977334. VBIBacSub10457_2856.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB14681.1.
PIRiD69979.
RefSeqiNP_390617.1. NC_000964.3.
WP_003229795.1. NZ_JNCM01000036.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VHXX-ray1.96A/B2-138[»]
ProteinModelPortaliO34634.
SMRiO34634. Positions 1-138.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100014961.

Proteomic databases

PaxDbiO34634.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB14681; CAB14681; BSU27390.
GeneIDi937357.
KEGGibsu:BSU27390.
PATRICi18977334. VBIBacSub10457_2856.

Phylogenomic databases

eggNOGiENOG4108Z08. Bacteria.
COG0816. LUCA.
HOGENOMiHOG000016953.
InParanoidiO34634.
KOiK07447.
OMAiPMGWTAQ.
PhylomeDBiO34634.

Enzyme and pathway databases

BioCyciBSUB:BSU27390-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO34634.

Family and domain databases

Gene3Di3.30.420.140. 1 hit.
HAMAPiMF_00651. Nuclease_YqgF. 1 hit.
InterProiIPR012337. RNaseH-like_dom.
IPR005227. YqgF.
IPR006641. YqgF/RNaseH-like_dom.
[Graphical view]
PfamiPF03652. RuvX. 1 hit.
[Graphical view]
SMARTiSM00732. YqgFc. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
TIGRFAMsiTIGR00250. RNAse_H_YqgF. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYQGF_BACSU
AccessioniPrimary (citable) accession number: O34634
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: January 1, 1998
Last modified: September 7, 2016
This is version 116 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Was originally suggested to be a nuclease that resolves Holliday junction intermediates during genetic recombination.1 Publication

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.