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O34579 (YFKD_BACSU) Reviewed, UniProtKB/Swiss-Prot

Last modified March 19, 2014. Version 59. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized protein YfkD
Gene names
Name:yfkD
Ordered Locus Names:BSU07930
OrganismBacillus subtilis (strain 168) [Reference proteome] [HAMAP]
Taxonomic identifier224308 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length264 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Induction

Transcriptionally regulated by the forespore-specific sigma factor, SigG, and the general stress response regulator, SigB. Ref.3

Ontologies

Keywords
   DomainSignal
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2626 Potential
Chain27 – 264238Uncharacterized protein YfkD
PRO_0000379096

Sequences

Sequence LengthMass (Da)Tools
O34579 [UniParc].

Last modified January 1, 1998. Version 1.
Checksum: 69C8E3A10DC57D99

FASTA26429,587
        10         20         30         40         50         60 
MMKKLFHSTL IVLLFFSFFG VQPIHAKKQF KVPNSVASIS KENTYPNASQ DQPMLQPSKL 

        70         80         90        100        110        120 
AKELLDHSEV KIENPHLIKM LNESNISGTP LAVGYRATIF LGKWALGYES NETVANWEYK 

       130        140        150        160        170        180 
KINTNRADNR GGKETAEMHY AQEQQYRVKG GLTAKVPNAE DVKSMMMQKA MKKTNLPLAF 

       190        200        210        220        230        240 
ETVIGAGTKR DQIYKVAPKK IGYLHAYAPA VNEKGKVTYG EVYLVLKGNK RKLVVKNVTS 

       250        260 
QGIGAWIPVQ DHVTFGFQLS SLPR 

« Hide

References

« Hide 'large scale' references
[1]"Cloning and sequencing of a 40.6 kb segment in the 73 degrees-76 degrees region of the Bacillus subtilis chromosome containing genes for trehalose metabolism and acetoin utilization."
Yamamoto H., Uchiyama S., Sekiguchi J.
Microbiology 142:3057-3065(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 168 / AC327.
[2]"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. expand/collapse author list , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 168.
[3]"Characterization of Bacillus subtilis YfkE (ChaA): a calcium-specific Ca2+/H+ antiporter of the CaCA family."
Fujisawa M., Wada Y., Tsuchiya T., Ito M.
Arch. Microbiol. 191:649-657(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: INDUCTION.
Strain: 168.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
D83967 Genomic DNA. Translation: BAA23394.1.
AL009126 Genomic DNA. Translation: CAB12622.1.
PIRH69807.
RefSeqNP_388674.1. NC_000964.3.

3D structure databases

ProteinModelPortalO34579.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING224308.BSU07930.

Proteomic databases

PaxDbO34579.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAB12622; CAB12622; BSU07930.
GeneID936138.
KEGGbsu:BSU07930.
PATRIC18973238. VBIBacSub10457_0833.

Organism-specific databases

GenoListBSU07930.

Phylogenomic databases

eggNOGNOG11176.
HOGENOMHOG000083012.
OMAGAWIPVQ.
OrthoDBEOG6C2WCM.
ProtClustDBCLSK872857.

Enzyme and pathway databases

BioCycBSUB:BSU07930-MONOMER.

Family and domain databases

InterProIPR025548. YfkD.
[Graphical view]
PfamPF14167. YfkD. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYFKD_BACSU
AccessionPrimary (citable) accession number: O34579
Secondary accession number(s): Q79EY3
Entry history
Integrated into UniProtKB/Swiss-Prot: July 7, 2009
Last sequence update: January 1, 1998
Last modified: March 19, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList