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Protein

Uncharacterized protein YfkD

Gene

yfkD

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU07930-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YfkD
Gene namesi
Name:yfkD
Ordered Locus Names:BSU07930
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001570 Componenti: Chromosome

Organism-specific databases

GenoListiBSU07930.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2626Sequence AnalysisAdd
BLAST
Chaini27 – 264238Uncharacterized protein YfkDPRO_0000379096Add
BLAST

Proteomic databases

PaxDbiO34579.

Expressioni

Inductioni

Transcriptionally regulated by the forespore-specific sigma factor, SigG, and the general stress response regulator, SigB.1 Publication

Interactioni

Protein-protein interaction databases

STRINGi224308.BSU07930.

Structurei

3D structure databases

ProteinModelPortaliO34579.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiNOG11176.
HOGENOMiHOG000083012.
OMAiGAWIPVQ.
OrthoDBiEOG6C2WCM.

Family and domain databases

InterProiIPR025548. YfkD.
[Graphical view]
PfamiPF14167. YfkD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O34579-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMKKLFHSTL IVLLFFSFFG VQPIHAKKQF KVPNSVASIS KENTYPNASQ
60 70 80 90 100
DQPMLQPSKL AKELLDHSEV KIENPHLIKM LNESNISGTP LAVGYRATIF
110 120 130 140 150
LGKWALGYES NETVANWEYK KINTNRADNR GGKETAEMHY AQEQQYRVKG
160 170 180 190 200
GLTAKVPNAE DVKSMMMQKA MKKTNLPLAF ETVIGAGTKR DQIYKVAPKK
210 220 230 240 250
IGYLHAYAPA VNEKGKVTYG EVYLVLKGNK RKLVVKNVTS QGIGAWIPVQ
260
DHVTFGFQLS SLPR
Length:264
Mass (Da):29,587
Last modified:January 1, 1998 - v1
Checksum:i69C8E3A10DC57D99
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D83967 Genomic DNA. Translation: BAA23394.1.
AL009126 Genomic DNA. Translation: CAB12622.1.
PIRiH69807.
RefSeqiNP_388674.1. NC_000964.3.
WP_003233657.1. NC_000964.3.

Genome annotation databases

EnsemblBacteriaiCAB12622; CAB12622; BSU07930.
GeneIDi936138.
KEGGibsu:BSU07930.
PATRICi18973238. VBIBacSub10457_0833.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D83967 Genomic DNA. Translation: BAA23394.1.
AL009126 Genomic DNA. Translation: CAB12622.1.
PIRiH69807.
RefSeqiNP_388674.1. NC_000964.3.
WP_003233657.1. NC_000964.3.

3D structure databases

ProteinModelPortaliO34579.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.BSU07930.

Proteomic databases

PaxDbiO34579.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12622; CAB12622; BSU07930.
GeneIDi936138.
KEGGibsu:BSU07930.
PATRICi18973238. VBIBacSub10457_0833.

Organism-specific databases

GenoListiBSU07930.

Phylogenomic databases

eggNOGiNOG11176.
HOGENOMiHOG000083012.
OMAiGAWIPVQ.
OrthoDBiEOG6C2WCM.

Enzyme and pathway databases

BioCyciBSUB:BSU07930-MONOMER.

Family and domain databases

InterProiIPR025548. YfkD.
[Graphical view]
PfamiPF14167. YfkD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and sequencing of a 40.6 kb segment in the 73 degrees-76 degrees region of the Bacillus subtilis chromosome containing genes for trehalose metabolism and acetoin utilization."
    Yamamoto H., Uchiyama S., Sekiguchi J.
    Microbiology 142:3057-3065(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168 / AC327.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.
  3. "Characterization of Bacillus subtilis YfkE (ChaA): a calcium-specific Ca2+/H+ antiporter of the CaCA family."
    Fujisawa M., Wada Y., Tsuchiya T., Ito M.
    Arch. Microbiol. 191:649-657(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: INDUCTION.
    Strain: 168.

Entry informationi

Entry nameiYFKD_BACSU
AccessioniPrimary (citable) accession number: O34579
Secondary accession number(s): Q79EY3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 7, 2009
Last sequence update: January 1, 1998
Last modified: January 7, 2015
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.