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Protein

Uncharacterized HTH-type transcriptional regulator YtcD

Gene

ytcD

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU29030-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YtcD
Gene namesi
Name:ytcD
Ordered Locus Names:BSU29030
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001488881 – 126Uncharacterized HTH-type transcriptional regulator YtcDAdd BLAST126

Proteomic databases

PaxDbiO34533.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100015836.

Structurei

Secondary structure

1126
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi10 – 17Combined sources8
Helixi22 – 29Combined sources8
Helixi36 – 42Combined sources7
Helixi48 – 60Combined sources13
Beta strandi63 – 69Combined sources7
Beta strandi71 – 73Combined sources3
Beta strandi75 – 80Combined sources6
Helixi84 – 87Combined sources4
Helixi88 – 102Combined sources15

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2HZTX-ray2.00A/B/C/D10-105[»]
ProteinModelPortaliO34533.
SMRiO34533.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO34533.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 106HTH hxlR-typePROSITE-ProRule annotationAdd BLAST99

Sequence similaritiesi

Contains 1 HTH hxlR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105KVH. Bacteria.
COG1733. LUCA.
HOGENOMiHOG000293547.
InParanoidiO34533.
OMAiWGRTHIT.
PhylomeDBiO34533.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR002577. HTH_HxlR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01638. HxlR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS51118. HTH_HXLR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O34533-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEKKKYNISV EATLEVIGGK WKCVILCHLT HGKKRTSELK RLMPNITQKM
60 70 80 90 100
LTQQLRELEA DGVINRIVYN QVPPKVEYEL SEYGRSLEGI LDMLCAWGAN
110 120
HINRVYGDTF SVLEESVLND KLKQES
Length:126
Mass (Da):14,495
Last modified:January 1, 1998 - v1
Checksum:i3DB8CC2168249AD4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF008220 Genomic DNA. Translation: AAC00354.1.
AL009126 Genomic DNA. Translation: CAB14863.1.
PIRiB69989.
RefSeqiNP_390781.1. NC_000964.3.
WP_003229458.1. NZ_JNCM01000036.1.

Genome annotation databases

EnsemblBacteriaiCAB14863; CAB14863; BSU29030.
GeneIDi936607.
KEGGibsu:BSU29030.
PATRICi18977698. VBIBacSub10457_3037.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF008220 Genomic DNA. Translation: AAC00354.1.
AL009126 Genomic DNA. Translation: CAB14863.1.
PIRiB69989.
RefSeqiNP_390781.1. NC_000964.3.
WP_003229458.1. NZ_JNCM01000036.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2HZTX-ray2.00A/B/C/D10-105[»]
ProteinModelPortaliO34533.
SMRiO34533.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100015836.

Proteomic databases

PaxDbiO34533.

Protocols and materials databases

DNASUi936607.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB14863; CAB14863; BSU29030.
GeneIDi936607.
KEGGibsu:BSU29030.
PATRICi18977698. VBIBacSub10457_3037.

Phylogenomic databases

eggNOGiENOG4105KVH. Bacteria.
COG1733. LUCA.
HOGENOMiHOG000293547.
InParanoidiO34533.
OMAiWGRTHIT.
PhylomeDBiO34533.

Enzyme and pathway databases

BioCyciBSUB:BSU29030-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO34533.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR002577. HTH_HxlR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01638. HxlR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS51118. HTH_HXLR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYTCD_BACSU
AccessioniPrimary (citable) accession number: O34533
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: January 1, 1998
Last modified: November 2, 2016
This is version 110 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.