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Protein

Uncharacterized sodium-dependent transporter YocR

Gene

yocR

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Putative sodium-dependent transporter.By similarity

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Symport, Transport

Enzyme and pathway databases

BioCyciBSUB:BSU19340-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized sodium-dependent transporter YocR
Gene namesi
Name:yocR
Ordered Locus Names:BSU19340
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei11 – 3121HelicalSequence analysisAdd
BLAST
Transmembranei39 – 5921HelicalSequence analysisAdd
BLAST
Transmembranei95 – 11521HelicalSequence analysisAdd
BLAST
Transmembranei141 – 16121HelicalSequence analysisAdd
BLAST
Transmembranei165 – 18521HelicalSequence analysisAdd
BLAST
Transmembranei212 – 23221HelicalSequence analysisAdd
BLAST
Transmembranei251 – 27121HelicalSequence analysisAdd
BLAST
Transmembranei295 – 31521HelicalSequence analysisAdd
BLAST
Transmembranei341 – 36121HelicalSequence analysisAdd
BLAST
Transmembranei377 – 39721HelicalSequence analysisAdd
BLAST
Transmembranei419 – 43921HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 445445Uncharacterized sodium-dependent transporter YocRPRO_0000360512Add
BLAST

Proteomic databases

PaxDbiO34383.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100010676.

Structurei

3D structure databases

ProteinModelPortaliO34383.
SMRiO34383. Positions 3-442.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105C8J. Bacteria.
COG0733. LUCA.
HOGENOMiHOG000033129.
InParanoidiO34383.
KOiK03308.
OMAiWIGYLGM.
OrthoDBiEOG6PGK51.
PhylomeDBiO34383.

Family and domain databases

InterProiIPR000175. Na/ntran_symport.
[Graphical view]
PANTHERiPTHR11616. PTHR11616. 1 hit.
PfamiPF00209. SNF. 2 hits.
[Graphical view]
PRINTSiPR00176. NANEUSMPORT.
PROSITEiPS00610. NA_NEUROTRAN_SYMP_1. 1 hit.
PS50267. NA_NEUROTRAN_SYMP_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O34383-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKEANQWSSK LGFILAAAGS AIGLGAIWKF PYVAGTSGGG AFLLIFILFT
60 70 80 90 100
VLIGLPLLLG EFIIGRRTQK DAVQSYKTLA PGTKWHWIGY LGMVTCFILL
110 120 130 140 150
SFYSVVGGWI LIYIIKGFTG GLSQTSGFDT IFASTISNPY LAVGGQLLFM
160 170 180 190 200
VVTILVVAKG VSSGIEKASQ VLMPALFLLF IILMVRSVTL DGAMEGIKFF
210 220 230 240 250
LMPDLTAIDA NTILYAMGQS FFLLSVGVSV MVTYSAYLEK QENLVQSAVS
260 270 280 290 300
VTVMNMLVAV MAGIAIFPAV FSFGLKPDQG PVLLFNVLPT VFNQMPFGII
310 320 330 340 350
FLLAFLLLFL FAALTSAFSM LEILVAVLSK GDINKRKRFA WLGGIAIFIV
360 370 380 390 400
GVPSALSYGV LSDVTIFHLS IFDAADYLVS NILMPLGALL ISIFVPLKIP
410 420 430 440
KQDLFDELKS GSNLKRKWFA VWLLLIRYLS PVAIIIVFLH VIGIF
Length:445
Mass (Da):48,334
Last modified:January 1, 1998 - v1
Checksum:i227B14096111537B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF027868 Genomic DNA. Translation: AAB84480.1.
AL009126 Genomic DNA. Translation: CAB13826.1.
PIRiD69902.
RefSeqiNP_389816.1. NC_000964.3.
WP_004399312.1. NZ_JNCM01000036.1.

Genome annotation databases

EnsemblBacteriaiCAB13826; CAB13826; BSU19340.
GeneIDi939450.
KEGGibsu:BSU19340.
PATRICi18975719. VBIBacSub10457_2050.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF027868 Genomic DNA. Translation: AAB84480.1.
AL009126 Genomic DNA. Translation: CAB13826.1.
PIRiD69902.
RefSeqiNP_389816.1. NC_000964.3.
WP_004399312.1. NZ_JNCM01000036.1.

3D structure databases

ProteinModelPortaliO34383.
SMRiO34383. Positions 3-442.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100010676.

Proteomic databases

PaxDbiO34383.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13826; CAB13826; BSU19340.
GeneIDi939450.
KEGGibsu:BSU19340.
PATRICi18975719. VBIBacSub10457_2050.

Phylogenomic databases

eggNOGiENOG4105C8J. Bacteria.
COG0733. LUCA.
HOGENOMiHOG000033129.
InParanoidiO34383.
KOiK03308.
OMAiWIGYLGM.
OrthoDBiEOG6PGK51.
PhylomeDBiO34383.

Enzyme and pathway databases

BioCyciBSUB:BSU19340-MONOMER.

Family and domain databases

InterProiIPR000175. Na/ntran_symport.
[Graphical view]
PANTHERiPTHR11616. PTHR11616. 1 hit.
PfamiPF00209. SNF. 2 hits.
[Graphical view]
PRINTSiPR00176. NANEUSMPORT.
PROSITEiPS00610. NA_NEUROTRAN_SYMP_1. 1 hit.
PS50267. NA_NEUROTRAN_SYMP_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence analysis of the Bacillus subtilis chromosome region between the terC and odhAB loci cloned in a yeast artificial chromosome."
    Lapidus A., Galleron N., Sorokin A., Ehrlich S.D.
    Submitted (NOV-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiYOCR_BACSU
AccessioniPrimary (citable) accession number: O34383
Secondary accession number(s): Q796C2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 1, 1998
Last modified: February 17, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.