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Protein

Putative cytochrome P450 YjiB

Gene

yjiB

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

hemeBy similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi349 – 3491Iron (heme axial ligand)By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Monooxygenase, Oxidoreductase

Keywords - Ligandi

Heme, Iron, Metal-binding

Enzyme and pathway databases

BioCyciBSUB:BSU12210-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative cytochrome P450 YjiB (EC:1.14.-.-)
Gene namesi
Name:yjiB
Ordered Locus Names:BSU12210
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 396396Putative cytochrome P450 YjiBPRO_0000052236Add
BLAST

Proteomic databases

PaxDbiO34374.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100006751.

Structurei

Secondary structure

1
396
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi27 – 3610Combined sources
Beta strandi38 – 425Combined sources
Turni43 – 464Combined sources
Beta strandi47 – 504Combined sources
Helixi53 – 619Combined sources
Turni63 – 653Combined sources
Helixi80 – 834Combined sources
Helixi88 – 969Combined sources
Helixi97 – 993Combined sources
Helixi102 – 12322Combined sources
Beta strandi127 – 1304Combined sources
Helixi131 – 1344Combined sources
Turni135 – 1373Combined sources
Helixi138 – 14710Combined sources
Helixi152 – 1543Combined sources
Helixi155 – 16511Combined sources
Beta strandi173 – 1753Combined sources
Helixi177 – 20428Combined sources
Helixi210 – 2156Combined sources
Helixi226 – 25732Combined sources
Helixi261 – 2677Combined sources
Helixi269 – 2713Combined sources
Helixi272 – 28211Combined sources
Beta strandi289 – 2957Combined sources
Beta strandi297 – 2993Combined sources
Beta strandi302 – 3043Combined sources
Beta strandi309 – 3124Combined sources
Helixi314 – 3174Combined sources
Turni321 – 3233Combined sources
Beta strandi324 – 3263Combined sources
Helixi352 – 36918Combined sources
Beta strandi374 – 3807Combined sources
Beta strandi388 – 3958Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4RM4X-ray1.77A1-396[»]
ProteinModelPortaliO34374.
SMRiO34374. Positions 25-396.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the cytochrome P450 family.Curated

Phylogenomic databases

eggNOGiENOG4106A3M. Bacteria.
COG2124. LUCA.
HOGENOMiHOG000243678.
InParanoidiO34374.
OMAiMECVSIT.
OrthoDBiEOG6JB11P.
PhylomeDBiO34374.

Family and domain databases

Gene3Di1.10.630.10. 1 hit.
InterProiIPR001128. Cyt_P450.
IPR002397. Cyt_P450_B.
IPR017972. Cyt_P450_CS.
[Graphical view]
PfamiPF00067. p450. 1 hit.
[Graphical view]
PRINTSiPR00359. BP450.
PR00385. P450.
SUPFAMiSSF48264. SSF48264. 1 hit.
PROSITEiPS00086. CYTOCHROME_P450. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O34374-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNVLNRRQAL QRALLNGKNK QDAYHPFPWY ESMRKDAPVS FDEENQVWSV
60 70 80 90 100
FLYDDVKKVV GDKELFSSCM PQQTSSIGNS IINMDPPKHT KIRSVVNKAF
110 120 130 140 150
TPRVMKQWEP RIQEITDELI QKFQGRSEFD LVHDFSYPLP VIVISELLGV
160 170 180 190 200
PSAHMEQFKA WSDLLVSTPK DKSEEAEKAF LEERDKCEEE LAAFFAGIIE
210 220 230 240 250
EKRNKPEQDI ISILVEAEET GEKLSGEELI PFCTLLLVAG NETTTNLISN
260 270 280 290 300
AMYSILETPG VYEELRSHPE LMPQAVEEAL RFRAPAPVLR RIAKRDTEIG
310 320 330 340 350
GHLIKEGDMV LAFVASANRD EAKFDRPHMF DIRRHPNPHI AFGHGIHFCL
360 370 380 390
GAPLARLEAN IALTSLISAF PHMECVSITP IENSVIYGLK SFRVKM
Length:396
Mass (Da):44,991
Last modified:January 1, 1998 - v1
Checksum:i9A89CF12613DBCFB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF015825 Genomic DNA. Translation: AAC46317.1.
AL009126 Genomic DNA. Translation: CAB13078.1.
PIRiB69851.
RefSeqiNP_389103.1. NC_000964.3.
WP_003232789.1. NZ_JNCM01000035.1.

Genome annotation databases

EnsemblBacteriaiCAB13078; CAB13078; BSU12210.
GeneIDi936452.
KEGGibsu:BSU12210.
PATRICi18974175. VBIBacSub10457_1280.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF015825 Genomic DNA. Translation: AAC46317.1.
AL009126 Genomic DNA. Translation: CAB13078.1.
PIRiB69851.
RefSeqiNP_389103.1. NC_000964.3.
WP_003232789.1. NZ_JNCM01000035.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4RM4X-ray1.77A1-396[»]
ProteinModelPortaliO34374.
SMRiO34374. Positions 25-396.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100006751.

Proteomic databases

PaxDbiO34374.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13078; CAB13078; BSU12210.
GeneIDi936452.
KEGGibsu:BSU12210.
PATRICi18974175. VBIBacSub10457_1280.

Phylogenomic databases

eggNOGiENOG4106A3M. Bacteria.
COG2124. LUCA.
HOGENOMiHOG000243678.
InParanoidiO34374.
OMAiMECVSIT.
OrthoDBiEOG6JB11P.
PhylomeDBiO34374.

Enzyme and pathway databases

BioCyciBSUB:BSU12210-MONOMER.

Family and domain databases

Gene3Di1.10.630.10. 1 hit.
InterProiIPR001128. Cyt_P450.
IPR002397. Cyt_P450_B.
IPR017972. Cyt_P450_CS.
[Graphical view]
PfamiPF00067. p450. 1 hit.
[Graphical view]
PRINTSiPR00359. BP450.
PR00385. P450.
SUPFAMiSSF48264. SSF48264. 1 hit.
PROSITEiPS00086. CYTOCHROME_P450. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A 35.7 kb DNA fragment from Bacillus subtilis chromosome containing a putative 12.3 kb operon involved in hexuronate catabolism and a perfect catabolite-responsive element."
    Rivolta C., Soldo B., Lazarevic V., Joris B., Mauel C., Karamata D.
    Submitted (JUL-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiYJIB_BACSU
AccessioniPrimary (citable) accession number: O34374
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: January 1, 1998
Last modified: February 17, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.