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Protein
Submitted name:

CbbRI

Gene

cbbRI

Organism
Rhodobacter capsulatus (Rhodopseudomonas capsulata)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
CbbRIImported
Gene namesi
Name:cbbRIImported
OrganismiRhodobacter capsulatus (Rhodopseudomonas capsulata)Imported
Taxonomic identifieri1061 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacter

Interactioni

Protein-protein interaction databases

STRINGi272942.RCAP_rcc00580.

Structurei

3D structure databases

ProteinModelPortaliO34014.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 60HTH lysR-type DNA-bindingInterPro annotationAdd BLAST60

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105DUM. Bacteria.
COG0583. LUCA.
HOGENOMiHOG000233518.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O34014-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRCTLRQLQV FAAVARHASY TRAAEELHLT QPAVFTQVKQ LEDALGAVLL
60 70 80 90 100
DRIGKRLFLT EAGQAVLATA RETLEGIERL EMQLADLQGL RRGRLRLAIV
110 120 130 140 150
STAQYFLPRL LGAFCTENPG IEVALTVTNR QTVIARLAAN EDDLCILGQP
160 170 180 190 200
PEGLDVVARP IARNAILVLA PPGHPLAGVT AVPFAALAEA PFILREPGSG
210 220 230 240 250
TRAAAEKFFA ENGIRPQVRM ELGSNEAIKA AVAAGLGLAI LSQDTITLEA
260 270 280 290
ETGRLAVLDV QGFPLLRVWN VAYPRGKHLS VAARAFLAHL AAGSAGPS
Length:298
Mass (Da):31,767
Last modified:January 1, 1998 - v1
Checksum:iFF9377FCB9879046
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U87283 Genomic DNA. Translation: AAC32308.1.

Genome annotation databases

PATRICi35501220. VBIRhoCap134200_0589.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U87283 Genomic DNA. Translation: AAC32308.1.

3D structure databases

ProteinModelPortaliO34014.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272942.RCAP_rcc00580.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

PATRICi35501220. VBIRhoCap134200_0589.

Phylogenomic databases

eggNOGiENOG4105DUM. Bacteria.
COG0583. LUCA.
HOGENOMiHOG000233518.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO34014_RHOCA
AccessioniPrimary (citable) accession number: O34014
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: November 30, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.