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Protein
Submitted name:

NADH dehydrogenase subunit 4

Gene

ndhD3

Organism
Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Ligandi

NADUniRule annotation, NADPUniRule annotation, PlastoquinoneUniRule annotation

Enzyme and pathway databases

BioCyciSSP32049:GKF7-173-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
NADH dehydrogenase subunit 4Imported
Submitted name:
Proton-translocating NADH-quinone oxidoreductase (NADH dehydrogenase subunit 4)Imported
Gene namesi
Name:ndhD3Imported
Synonyms:ndhD-IIIImported
Ordered Locus Names:SYNPCC7002_A0173Imported
OrganismiSynechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum)Imported
Taxonomic identifieri32049 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus
Proteomesi
  • UP000001688 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei27 – 4822HelicalSequence analysisAdd
BLAST
Transmembranei77 – 9519HelicalSequence analysisAdd
BLAST
Transmembranei104 – 12219HelicalSequence analysisAdd
BLAST
Transmembranei128 – 14619HelicalSequence analysisAdd
BLAST
Transmembranei158 – 18124HelicalSequence analysisAdd
BLAST
Transmembranei201 – 22323HelicalSequence analysisAdd
BLAST
Transmembranei235 – 25622HelicalSequence analysisAdd
BLAST
Transmembranei268 – 28720HelicalSequence analysisAdd
BLAST
Transmembranei294 – 31219HelicalSequence analysisAdd
BLAST
Transmembranei318 – 34225HelicalSequence analysisAdd
BLAST
Transmembranei363 – 38927HelicalSequence analysisAdd
BLAST
Transmembranei401 – 42323HelicalSequence analysisAdd
BLAST
Transmembranei447 – 46620HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Keywords - PTMi

QuinoneUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi32049.SYNPCC7002_A0173.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini122 – 415294Proton_antipo_MInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105C8S. Bacteria.
COG1008. LUCA.
HOGENOMiHOG000100683.
KOiK05575.
OMAiTAYYPRV.
OrthoDBiEOG647TZ6.

Family and domain databases

InterProiIPR010227. NADH_Q_OxRdtase_chainM/4.
IPR003918. NADH_UbQ_OxRdtase.
IPR001750. ND/Mrp_mem.
[Graphical view]
PfamiPF00361. Proton_antipo_M. 1 hit.
[Graphical view]
PRINTSiPR01437. NUOXDRDTASE4.
TIGRFAMsiTIGR01972. NDH_I_M. 1 hit.

Sequencei

Sequence statusi: Complete.

O33750-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLSFLLFLPL VGIGAIALFP RPLTRIVATV FTVVTLAISS GLLINLNLQD
60 70 80 90 100
AGMQYTEFHN WLSILGLNYN LGVDGLSLPL IVLNSLLTLV AIYSIGESNH
110 120 130 140 150
RPKLYYSLIL LINSGITGAL IANNLLLFFL FYEIELIPFY LLIAIWGGEK
160 170 180 190 200
KGYASTKFLI YTAISGLCVL AAFLGIVWLS QSSNFDFENL TLENLEFNTK
210 220 230 240 250
VILLTILLIG FGIKIPLVPL HTWLPDAYVE ANPAVTVLLG GVFAKLGTYG
260 270 280 290 300
LVRFGLQLFP DVWSTVSPAL AVIGTVSVMY GSLAAIAQRD LKRMVAYSSI
310 320 330 340 350
GHMGYILVST AAGTELSLLG AVAQMISHSL ILALLFHLVG IIERKVGTRD
360 370 380 390 400
LDVLNGLMNP VRGLPLTSSL LILAGMASAG IPGLVGFVAE FLVFQGSFSR
410 420 430 440 450
FPIPTLFCII ASGLTAVYFV ILLNRTCFGR LDSHTAYYPK VFASEKIPAI
460 470 480 490
ALTVIILFLG LQPAWLTRWI EPTTSQFIAA IPTVQTIALT PAELSKAP
Length:498
Mass (Da):53,900
Last modified:January 1, 1998 - v1
Checksum:iA0FEBCD32A4AA8DE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U97516 Genomic DNA. Translation: AAB62185.1.
CP000951 Genomic DNA. Translation: ACA98187.1.
PIRiT14236.
RefSeqiWP_012305811.1. NC_010475.1.

Genome annotation databases

EnsemblBacteriaiACA98187; ACA98187; SYNPCC7002_A0173.
KEGGisyp:SYNPCC7002_A0173.
PATRICi23814768. VBISynSp37135_0350.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U97516 Genomic DNA. Translation: AAB62185.1.
CP000951 Genomic DNA. Translation: ACA98187.1.
PIRiT14236.
RefSeqiWP_012305811.1. NC_010475.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi32049.SYNPCC7002_A0173.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACA98187; ACA98187; SYNPCC7002_A0173.
KEGGisyp:SYNPCC7002_A0173.
PATRICi23814768. VBISynSp37135_0350.

Phylogenomic databases

eggNOGiENOG4105C8S. Bacteria.
COG1008. LUCA.
HOGENOMiHOG000100683.
KOiK05575.
OMAiTAYYPRV.
OrthoDBiEOG647TZ6.

Enzyme and pathway databases

BioCyciSSP32049:GKF7-173-MONOMER.

Family and domain databases

InterProiIPR010227. NADH_Q_OxRdtase_chainM/4.
IPR003918. NADH_UbQ_OxRdtase.
IPR001750. ND/Mrp_mem.
[Graphical view]
PfamiPF00361. Proton_antipo_M. 1 hit.
[Graphical view]
PRINTSiPR01437. NUOXDRDTASE4.
TIGRFAMsiTIGR01972. NDH_I_M. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Transcriptional regulation of the CO2-concentrating mechanism in a coastal marine cyanobacterium, Synechococcus sp. PCC7002: role of NdhR/CcmR."
    Woodger F.J., Bryant D.A., Price G.D.
    Submitted (APR-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "The involvement of NAD(P)H dehydrogenase subunits, NdhD3 and NdhF3, in high-affinity CO2 uptake in Synechococcus sp. PCC7002 gives evidence for multiple NDH-1 complexes with specific roles in cyanobacteria."
    Klughammer B., Sultemeyer D., Badger M.R., Price G.D.
    Mol. Microbiol. 32:1305-1315(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  3. Bryant D.A., Li T., Zhao J.
    Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  4. "Complete sequence of Synechococcus sp. PCC 7002."
    Li T., Zhao J., Zhao C., Liu Z., Zhao F., Marquardt J., Nomura C.T., Persson S., Detter J.C., Richardson P.M., Lanz C., Schuster S.C., Wang J., Li S., Huang X., Cai T., Yu Z., Luo J., Zhao J., Bryant D.A.
    Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 27264 / PCC 7002 / PR-6Imported.
  5. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: PCC 7002Imported.

Entry informationi

Entry nameiO33750_SYNP2
AccessioniPrimary (citable) accession number: O33750
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: March 16, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.