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Protein
Submitted name:

CO2-concentrating mechanism regulator

Gene

ccmR

Organism
Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi21 – 40H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
CO2-concentrating mechanism regulatorImported
Submitted name:
Transcription regulator of rubisco operon, RbcR (LysR family)Imported
Gene namesi
Name:ccmRImported
Synonyms:rbcRImported
Ordered Locus Names:SYNPCC7002_A0171Imported
OrganismiSynechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum)Imported
Taxonomic identifieri32049 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesSynechococcaceaeSynechococcus
Proteomesi
  • UP000001688 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi32049.SYNPCC7002_A0171

Structurei

3D structure databases

ProteinModelPortaliO33748
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 61HTH lysR-typeInterPro annotationAdd BLAST61

Phylogenomic databases

eggNOGiENOG4105DUM Bacteria
COG0583 LUCA
HOGENOMiHOG000233518
KOiK21703
OMAiIEGPCHH
OrthoDBiPOG091H031C

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
PRINTSiPR00039 HTHLYSR
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

O33748-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIPATLHQLK VFETTARHGS FTKAAEELSI TQPTVSGQVK QLTQTIGMPL
60 70 80 90 100
FEHIGRKLYL TEAGEELLAT CQEIFERLDN FEMKLAALQG AKRGQLRLGV
110 120 130 140 150
ITTTKYFVPR ILGEFCQDYP DIDVSLQVIN HQQLHDRMAD NLDDLYILSN
160 170 180 190 200
LPDDLDVHAQ AFLDNPLVVV ARADHPLAHQ KNLPLSVLDG ADFVTREMGS
210 220 230 240 250
GTRLAVEKLL AEHDVSVQVR LELGSNEAIK QAIAGGLGIS VLSRHTLITE
260 270 280 290 300
PPHGELTVLD VEHFPIQRHW YVAYLAGKQL SVIAQAFLEF MVRSSQKTLE
310
NSGRRSLALQ P
Length:311
Mass (Da):34,613
Last modified:January 1, 1998 - v1
Checksum:iB930AA3616C65E79
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U97516 Genomic DNA Translation: AAB62183.1
CP000951 Genomic DNA Translation: ACA98185.1
PIRiT14234
RefSeqiWP_012305809.1, NC_010475.1

Genome annotation databases

EnsemblBacteriaiACA98185; ACA98185; SYNPCC7002_A0171
KEGGisyp:SYNPCC7002_A0171

Similar proteinsi

Entry informationi

Entry nameiO33748_SYNP2
AccessioniPrimary (citable) accession number: O33748
Entry historyiIntegrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: March 28, 2018
This is version 105 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health