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Protein
Submitted name:

CO2-concentrating mechanism regulator

Gene

ccmR

Organism
Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciSSP32049:GKF7-171-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
CO2-concentrating mechanism regulatorImported
Submitted name:
Transcription regulator of rubisco operon, RbcR (LysR family)Imported
Gene namesi
Name:ccmRImported
Synonyms:rbcRImported
Ordered Locus Names:SYNPCC7002_A0171Imported
OrganismiSynechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum)Imported
Taxonomic identifieri32049 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus
Proteomesi
  • UP000001688 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi32049.SYNPCC7002_A0171.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 6161HTH lysR-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105DUM. Bacteria.
COG0583. LUCA.
HOGENOMiHOG000233518.
OMAiKYFIPRL.
OrthoDBiEOG67X1QR.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O33748-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIPATLHQLK VFETTARHGS FTKAAEELSI TQPTVSGQVK QLTQTIGMPL
60 70 80 90 100
FEHIGRKLYL TEAGEELLAT CQEIFERLDN FEMKLAALQG AKRGQLRLGV
110 120 130 140 150
ITTTKYFVPR ILGEFCQDYP DIDVSLQVIN HQQLHDRMAD NLDDLYILSN
160 170 180 190 200
LPDDLDVHAQ AFLDNPLVVV ARADHPLAHQ KNLPLSVLDG ADFVTREMGS
210 220 230 240 250
GTRLAVEKLL AEHDVSVQVR LELGSNEAIK QAIAGGLGIS VLSRHTLITE
260 270 280 290 300
PPHGELTVLD VEHFPIQRHW YVAYLAGKQL SVIAQAFLEF MVRSSQKTLE
310
NSGRRSLALQ P
Length:311
Mass (Da):34,613
Last modified:January 1, 1998 - v1
Checksum:iB930AA3616C65E79
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U97516 Genomic DNA. Translation: AAB62183.1.
CP000951 Genomic DNA. Translation: ACA98185.1.
PIRiT14234.
RefSeqiWP_012305809.1. NC_010475.1.

Genome annotation databases

EnsemblBacteriaiACA98185; ACA98185; SYNPCC7002_A0171.
KEGGisyp:SYNPCC7002_A0171.
PATRICi23814764. VBISynSp37135_0348.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U97516 Genomic DNA. Translation: AAB62183.1.
CP000951 Genomic DNA. Translation: ACA98185.1.
PIRiT14234.
RefSeqiWP_012305809.1. NC_010475.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi32049.SYNPCC7002_A0171.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACA98185; ACA98185; SYNPCC7002_A0171.
KEGGisyp:SYNPCC7002_A0171.
PATRICi23814764. VBISynSp37135_0348.

Phylogenomic databases

eggNOGiENOG4105DUM. Bacteria.
COG0583. LUCA.
HOGENOMiHOG000233518.
OMAiKYFIPRL.
OrthoDBiEOG67X1QR.

Enzyme and pathway databases

BioCyciSSP32049:GKF7-171-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Transcriptional regulation of the CO2-concentrating mechanism in a coastal marine cyanobacterium, Synechococcus sp. PCC7002: role of NdhR/CcmR."
    Woodger F.J., Bryant D.A., Price G.D.
    Submitted (APR-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "The involvement of NAD(P)H dehydrogenase subunits, NdhD3 and NdhF3, in high-affinity CO2 uptake in Synechococcus sp. PCC7002 gives evidence for multiple NDH-1 complexes with specific roles in cyanobacteria."
    Klughammer B., Sultemeyer D., Badger M.R., Price G.D.
    Mol. Microbiol. 32:1305-1315(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  3. Bryant D.A., Li T., Zhao J.
    Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  4. "Complete sequence of Synechococcus sp. PCC 7002."
    Li T., Zhao J., Zhao C., Liu Z., Zhao F., Marquardt J., Nomura C.T., Persson S., Detter J.C., Richardson P.M., Lanz C., Schuster S.C., Wang J., Li S., Huang X., Cai T., Yu Z., Luo J., Zhao J., Bryant D.A.
    Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 27264 / PCC 7002 / PR-6Imported.
  5. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: PCC 7002Imported.

Entry informationi

Entry nameiO33748_SYNP2
AccessioniPrimary (citable) accession number: O33748
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: March 16, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.