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Protein
Submitted name:

Cold shock protein CspD

Gene

cspB

Organism
Staphylococcus aureus
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Cold shock protein CspDImported
Submitted name:
Cold-shock proteinImported
Submitted name:
CspBImported
Gene namesi
Name:cspBImported
Synonyms:cspCImported
ORF Names:AS858_09870Imported, BN1321_430081Imported, BN1326_150230Imported, EQ80_013610Imported, ER12_013605Imported, HMPREF3211_01006Imported
OrganismiStaphylococcus aureusImported
Taxonomic identifieri1280 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcaceaeStaphylococcus
Proteomesi
  • UP000042520 Componenti: Unassembled WGS sequence
  • UP000070177 Componenti: Unassembled WGS sequence
  • UP000070070 Componenti: Chromosome
  • UP000039437 Componenti: Unassembled WGS sequence

Subcellular locationi

  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CytoplasmSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi93062.SACOL2731.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3 – 6664CSPInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 CSD (cold-shock) domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105VEQ. Bacteria.
COG1278. LUCA.
KOiK03704.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR012156. Cold_shock_CspA.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PIRSFiPIRSF002599. Cold_shock_A. 1 hit.
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O33591-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNNGTVKWFN AEKGFGFIEQ ENGGDVFVHF SGIASDGYKT LEEGQKVTFE
60
ITEGQRGDQA VNVQTV
Length:66
Mass (Da):7,258
Last modified:January 1, 1998 - v1
Checksum:i8AB2BF8C252C1AC7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF003592 Genomic DNA. Translation: AAB61743.1.
CP007676 Genomic DNA. Translation: ALK37905.1.
CP007672 Genomic DNA. Translation: ALK40506.1.
CP013231 Genomic DNA. Translation: AMO15385.1.
CVOP01000007 Genomic DNA. Translation: CRI07641.1.
CVOU01000007 Genomic DNA. Translation: CRI18716.1.
CVOQ01000038 Genomic DNA. Translation: CRI20097.1.
LRQH01000088 Genomic DNA. Translation: KXA37233.1.
PIRiG90079.
RefSeqiWP_001059079.1. NZ_LSMV01000003.1.

Genome annotation databases

EnsemblBacteriaiAIL59189; AIL59189; CH51_14405.
AKJ50448; AKJ50448; AA961_13785.
AKK59813; AKK59813; EP54_14065.
AKK62379; AKK62379; EQ90_13610.
CEF82106; CEF82106; SAU060112_40539.
KLL97804; KLL97804; RK64_00625.
KLM02561; KLM02561; RK60_13805.
KLM03451; KLM03451; RK61_03725.
KLM06017; KLM06017; RK66_11585.
KLM08612; KLM08612; RK70_10090.
KLM13509; KLM13509; RK65_03810.
KLM15971; KLM15971; RK75_04245.
KLM18580; KLM18580; RK73_11260.
KLM20113; KLM20113; RK68_04810.
KLM23425; KLM23425; RK77_07100.
KLM25812; KLM25812; RK79_02390.
KLM29013; KLM29013; RK63_04855.
KLM32063; KLM32063; RK74_06575.
KLM33752; KLM33752; RK69_12245.
KLM34700; KLM34700; RK78_02950.
KLM37670; KLM37670; RK72_04550.
KLM40836; KLM40836; RK67_04265.
KLM45220; KLM45220; RK76_06555.
KLM48079; KLM48079; RK62_06720.
KLM50230; KLM50230; RK80_04585.
KLM53284; KLM53284; RK85_05165.
KLM57135; KLM57135; RK86_06875.
KLM58759; KLM58759; RK71_04855.
KLM61182; KLM61182; RK83_02700.
KLM66176; KLM66176; RK82_11145.
KLM68535; KLM68535; RK81_11170.
KLM70815; KLM70815; RK89_06850.
KLM72741; KLM72741; RK84_05600.
KLM74455; KLM74455; RK91_03905.
KLM78875; KLM78875; RK92_09815.
KLM81468; KLM81468; RK87_09120.
KLM84779; KLM84779; RK90_11780.
KLM87460; KLM87460; RK88_11465.
KLM89237; KLM89237; RK98_06180.
KLM91883; KLM91883; RK94_11525.
KLM94183; KLM94183; RK99_05280.
KLM99251; KLM99251; RK95_07020.
KLN02176; KLN02176; RL04_03925.
KLN06257; KLN06257; RK96_07320.
KLN09260; KLN09260; RL06_06730.
KLN11574; KLN11574; RL02_03920.
KLN15964; KLN15964; RL01_10845.
KLN18480; KLN18480; RL08_08245.
KLN21640; KLN21640; RK93_08325.
KLN25037; KLN25037; RL00_10785.
KLN26240; KLN26240; RL03_02395.
KLN27527; KLN27527; RL07_12890.
KLN29448; KLN29448; RL05_07395.
KMY69449; KMY69449; TM61_11815.
KMY69507; KMY69507; TM58_12055.
KMY69561; KMY69561; TM59_12370.
KMY76711; KMY76711; TM60_13055.
KOQ00987; KOQ00987; ABW30_13640.
KOQ01085; KOQ01085; ABW29_13560.
KOQ06744; KOQ06744; ABW28_05455.
KOQ08617; KOQ08617; ABW31_13610.
KOQ09378; KOQ09378; ABW32_13660.
KOQ15595; KOQ15595; ABW33_08590.
KOS66122; KOS66122; AN169_00545.
KQB71675; KQB71675; AL077_02415.
KQB73019; KQB73019; AL078_04710.
KEGGisaud:CH52_05495.
sauf:X998_2691.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF003592 Genomic DNA. Translation: AAB61743.1.
CP007676 Genomic DNA. Translation: ALK37905.1.
CP007672 Genomic DNA. Translation: ALK40506.1.
CP013231 Genomic DNA. Translation: AMO15385.1.
CVOP01000007 Genomic DNA. Translation: CRI07641.1.
CVOU01000007 Genomic DNA. Translation: CRI18716.1.
CVOQ01000038 Genomic DNA. Translation: CRI20097.1.
LRQH01000088 Genomic DNA. Translation: KXA37233.1.
PIRiG90079.
RefSeqiWP_001059079.1. NZ_LSMV01000003.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi93062.SACOL2731.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAIL59189; AIL59189; CH51_14405.
AKJ50448; AKJ50448; AA961_13785.
AKK59813; AKK59813; EP54_14065.
AKK62379; AKK62379; EQ90_13610.
CEF82106; CEF82106; SAU060112_40539.
KLL97804; KLL97804; RK64_00625.
KLM02561; KLM02561; RK60_13805.
KLM03451; KLM03451; RK61_03725.
KLM06017; KLM06017; RK66_11585.
KLM08612; KLM08612; RK70_10090.
KLM13509; KLM13509; RK65_03810.
KLM15971; KLM15971; RK75_04245.
KLM18580; KLM18580; RK73_11260.
KLM20113; KLM20113; RK68_04810.
KLM23425; KLM23425; RK77_07100.
KLM25812; KLM25812; RK79_02390.
KLM29013; KLM29013; RK63_04855.
KLM32063; KLM32063; RK74_06575.
KLM33752; KLM33752; RK69_12245.
KLM34700; KLM34700; RK78_02950.
KLM37670; KLM37670; RK72_04550.
KLM40836; KLM40836; RK67_04265.
KLM45220; KLM45220; RK76_06555.
KLM48079; KLM48079; RK62_06720.
KLM50230; KLM50230; RK80_04585.
KLM53284; KLM53284; RK85_05165.
KLM57135; KLM57135; RK86_06875.
KLM58759; KLM58759; RK71_04855.
KLM61182; KLM61182; RK83_02700.
KLM66176; KLM66176; RK82_11145.
KLM68535; KLM68535; RK81_11170.
KLM70815; KLM70815; RK89_06850.
KLM72741; KLM72741; RK84_05600.
KLM74455; KLM74455; RK91_03905.
KLM78875; KLM78875; RK92_09815.
KLM81468; KLM81468; RK87_09120.
KLM84779; KLM84779; RK90_11780.
KLM87460; KLM87460; RK88_11465.
KLM89237; KLM89237; RK98_06180.
KLM91883; KLM91883; RK94_11525.
KLM94183; KLM94183; RK99_05280.
KLM99251; KLM99251; RK95_07020.
KLN02176; KLN02176; RL04_03925.
KLN06257; KLN06257; RK96_07320.
KLN09260; KLN09260; RL06_06730.
KLN11574; KLN11574; RL02_03920.
KLN15964; KLN15964; RL01_10845.
KLN18480; KLN18480; RL08_08245.
KLN21640; KLN21640; RK93_08325.
KLN25037; KLN25037; RL00_10785.
KLN26240; KLN26240; RL03_02395.
KLN27527; KLN27527; RL07_12890.
KLN29448; KLN29448; RL05_07395.
KMY69449; KMY69449; TM61_11815.
KMY69507; KMY69507; TM58_12055.
KMY69561; KMY69561; TM59_12370.
KMY76711; KMY76711; TM60_13055.
KOQ00987; KOQ00987; ABW30_13640.
KOQ01085; KOQ01085; ABW29_13560.
KOQ06744; KOQ06744; ABW28_05455.
KOQ08617; KOQ08617; ABW31_13610.
KOQ09378; KOQ09378; ABW32_13660.
KOQ15595; KOQ15595; ABW33_08590.
KOS66122; KOS66122; AN169_00545.
KQB71675; KQB71675; AL077_02415.
KQB73019; KQB73019; AL078_04710.
KEGGisaud:CH52_05495.
sauf:X998_2691.

Phylogenomic databases

eggNOGiENOG4105VEQ. Bacteria.
COG1278. LUCA.
KOiK03704.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR012156. Cold_shock_CspA.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PIRSFiPIRSF002599. Cold_shock_A. 1 hit.
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Pathogenic Yersinia species carry a novel, cold-inducible major cold shock protein tandem gene duplication producing both bicistronic and monocistronic mRNA."
    Neuhaus K., Francis K.P., Rapposch S., Gorg A., Scherer S.
    J. Bacteriol. 181:6449-6455(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: RN4220Imported.
  2. "Parallel Epidemics of Community-Associated Methicillin-Resistant Staphylococcus aureus USA300 Infection in North and South America."
    Planet P.J., Diaz L., Kolokotronis S.O., Narechania A., Reyes J., Xing G., Rincon S., Smith H., Panesso D., Ryan C., Smith D.P., Guzman M., Zurita J., Sebra R., Deikus G., Nolan R.L., Tenover F.C., Weinstock G.M., Robinson D.A., Arias C.A.
    J. Infect. Dis. 0:0-0(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: CA12Imported and HUV05Imported.
  3. Syromyatnikov M.Y., Popov V.N.
    Submitted (APR-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AH1Imported and SH3Imported.
  4. Zhang Y., Guo Z.
    Submitted (NOV-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: UTSW MRSA 55Imported.
  5. Oliw E.H.
    Submitted (JAN-2016) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PSS7673Imported.

Entry informationi

Entry nameiO33591_STAAU
AccessioniPrimary (citable) accession number: O33591
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: June 8, 2016
This is version 99 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.