O33539 (O33539_RHOOP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative regulator of catechol degradative operon EMBL CAA67940.1

Gene names

Name:

catR EMBL CAA67940.1

Organism

Rhodococcus opacus (Nocardia opaca) EMBL CAA67940.1

Taxonomic identifier

37919 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Rhodococcus

Protein attributes

Sequence length	256 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Contains 1 HTH iclR-type DNA-binding domain. RuleBase RU000705

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU000705
Ligand	DNA-binding RuleBase RU000705
Technical term	3D-structure PDB 2G7U
Gene Ontology (GO)
Biological process	positive regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro protocatechuate metabolic process Inferred from electronic annotation. Source: InterPro transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	O33539 [UniParc]. Last modified January 1, 1998. Version 1. Checksum: 18E9302BF2533C31	FASTA	256	27,037
	10 20 30 40 50 60 MTESDRDYIQ SIERGFAVLL AFDAQRPNPT LAELATEAGL SRPAVRRILL TLQKLGYVAG 70 80 90 100 110 120 SGGRWSLTPR VLSIGQHYSE SHALIEAAMP RLLEVAEKTQ ESASLGVLDG ADVVYAARVP 130 140 150 160 170 180 VRRIMSINVS VGTRVPAYAT SMGRALLAWA PADVVEQVVA ESTFEKLGPE TISTAAELDK 190 200 210 220 230 240 ELAKVREQGF ALTSEELEKG LISLPAPVRD AGGTVVGVVA CSTSSARNTP AQFREQAVPC 250 VLAAAAALST DMGFAG

References

[1]	"Characterization of catechol catabolic genes from Rhodococcus erythropolis 1CP." Eulberg D., Golovleva L.A., Schloemann M. J. Bacteriol. 179:370-381(1997) [PubMed: 8990288] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: 1CP EMBL CAA67940.1.
[2]	Eulberg D. Submitted (SEP-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: 1CP EMBL CAA67940.1.
[3]	"2.3 A structure of putative catechol degradative operon regulator from Rhodococcus sp. RHA1." Zheng H., Skarina T., Chruszcz M., Cymborowski M., Grabowski M., Onopriyenko O., Savchenko A., Edwards A., Minor W. Submitted (MAR-2006) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

X99622 Genomic DNA. Translation: CAA67940.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2G7U	X-ray	2.30	A/B/C/D	1-256	[»]

ProteinModelPortal

O33539.

SMR

O33539. Positions 5-255.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Family and domain databases

InterPro

IPR012794. PcaR_PcaU.
IPR014757. Tscrpt_reg_IclR_C.
IPR005471. Tscrpt_reg_IclR_N.
IPR011991. WHTH_trsnscrt_rep_DNA-bd.
[Graphical view]

Gene3D

G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 1 hit.

Pfam

PF09339. HTH_IclR. 1 hit.
PF01614. IclR. 1 hit.
[Graphical view]

SMART

SM00346. HTH_ICLR. 1 hit.
[Graphical view]

TIGRFAMs

TIGR02431. PcaR_pcaU. 1 hit.

PROSITE

PS51077. HTH_ICLR. 1 hit.
PS51078. ICLR_ED. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

O33539_RHOOP

Accession

Primary (citable) accession number: O33539

Entry history

Integrated into UniProtKB/TrEMBL:	January 1, 1998
Last sequence update:	January 1, 1998
Last modified:	June 28, 2011
This is version 65 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)