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O33016 (RIMM_MYCLE) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 70. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribosome maturation factor rimM
Gene names
Name:rimM
Ordered Locus Names:ML1616
ORF Names:MLCB250.34
OrganismMycobacterium leprae [Complete proteome] [HAMAP]
Taxonomic identifier1769 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium

Protein attributes

Sequence length179 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes By similarity. HAMAP MF_00014

Subunit structure

Binds ribosomal protein S19 By similarity. HAMAP MF_00014

Subcellular location

Cytoplasm By similarity HAMAP MF_00014.

Domain

The PRC barrel domain binds ribosomal protein S19 By similarity. HAMAP MF_00014

Sequence similarities

Belongs to the rimM family.

Contains 1 PRC barrel domain.

Ontologies

Keywords
   Biological processRibosome biogenesis
   Cellular componentCytoplasm
   Molecular functionChaperone
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processrRNA processing

Inferred from electronic annotation. Source: InterPro

   Cellular componentribosome

Inferred from electronic annotation. Source: InterPro

   Molecular functionribosome binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 179179Ribosome maturation factor rimM HAMAP MF_00014
PRO_0000163318

Regions

Domain104 – 17673PRC barrel

Sequences

Sequence LengthMass (Da)Tools
O33016 [UniParc].

Last modified January 1, 1998. Version 1.
Checksum: F95FFD5C3735930E

FASTA17919,295
        10         20         30         40         50         60 
MHAHGALLEL TIGRVVKAHG IGGEVVVEIR TDDPASRFCP GNILRAKDFP RGGPERRYTV 

        70         80         90        100        110        120 
VYAREHGARL LVRLAGVSDR DAADALRGSL FVIDSLDLPP IDEPDTYYDH QLEGLQVRTM 

       130        140        150        160        170 
MGRDVGVVAE VLHTAAGELL AVRCDSGEVL VPFVGAIVKL VSLDDGIVEI DPPKGLLDL

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		Z97369 Genomic DNA. Translation: CAB10628.1.
AL583922 Genomic DNA. Translation: CAC30567.1.
PIRB87111.
RefSeqNP_302114.1. NC_002677.1.

3D structure databases

ProteinModelPortalO33016.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBMYCT00000028473; EBMYCP00000028079; EBMYCG00000028468.
GeneID909820.
GenomeReviewsGene locus ML1616 in contig AL450380_GR.
KEGGmle:ML1616.
NMPDRfig|272631.1.peg.986.
PATRIC18056220. VBIMycLep78757_3042.

Organism-specific databases

LepromaML1616.
CMRSearch...

Phylogenomic databases

GeneTreeEBGT00050000017443.
HOGENOMHBG703775.
OMAPDEFYDH.
ProtClustDBPRK00122.

Enzyme and pathway databases

BioCycMLEP272631:ML1616-MONOMER.

Family and domain databases

HAMAPMF_00014. Ribosome_mat_RimM.
[Tree]
InterProIPR011961. 16S_RimM.
IPR007903. PRC_barrel.
IPR011033. PRC_barrell-like.
IPR002676. RimM.
IPR009000. Transl_elong_init/rib_B-barrel.
[Graphical view]
Gene3DG3DSA:2.40.30.60. G3DSA:2.40.30.60. 1 hit.
KOK02860.
PfamPF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]
SUPFAMSSF50346. PRCH_cytoplasmic. 1 hit.
SSF50447. Translat_factor. 1 hit.
TIGRFAMsTIGR02273. 16S_RimM. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRIMM_MYCLE
AccessionPrimary (citable) accession number: O33016
Entry history
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: January 1, 1998
Last modified: January 25, 2012
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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