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Protein
Submitted name:

Uncharacterized protein

Gene

ORF17

Organism
Lactococcus lactis
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi25 – 46H-T-H motifPROSITE-ProRule annotationAdd BLAST22
DNA bindingi73 – 96H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:ORF17Imported
Encoded oniPlasmid pK214Imported
OrganismiLactococcus lactisImported
Taxonomic identifieri1358 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesStreptococcaceaeLactococcus

Structurei

3D structure databases

ProteinModelPortaliO32788.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 106HTH araC/xylS-type DNA-bindingInterPro annotationAdd BLAST99

Family and domain databases

Gene3Di3.20.80.10. 1 hit.
InterProiView protein in InterPro
IPR010499. AraC_E-bd.
IPR029442. GyrI-like.
IPR009057. Homeobox-like.
IPR018060. HTH_AraC.
IPR018062. HTH_AraC-typ_CS.
IPR011256. Reg_factor_effector_dom.
IPR020449. Tscrpt_reg_HTH_AraC-type.
PfamiView protein in Pfam
PF06445. GyrI-like. 1 hit.
PF12833. HTH_18. 1 hit.
PRINTSiPR00032. HTHARAC.
SMARTiView protein in SMART
SM00871. AraC_E_bind. 1 hit.
SM00342. HTH_ARAC. 1 hit.
SUPFAMiSSF46689. SSF46689. 2 hits.
PROSITEiView protein in PROSITE
PS00041. HTH_ARAC_FAMILY_1. 1 hit.
PS01124. HTH_ARAC_FAMILY_2. 1 hit.

Sequencei

Sequence statusi: Complete.

O32788-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDWLERMNNA LNYIENSLNE EIDYKEIAKA ANCSEFHFSR MFSSISGISL
60 70 80 90 100
SEYIRRRRLT LAAFEIQKSD IRIIDVAIKY GYVSSDTFSR AFQKMHGVTP
110 120 130 140 150
SNARNRGVQL KAFPRISFQI SIKGDTEMEY RIENLDFELR IVGKSKPVKT
160 170 180 190 200
SRAFKTIPTL WNTAKKDGFM QELVDMSWEN PKCTLESLLG VCGKEAAITD
210 220 230 240 250
EQFSYFMGVR YDGESPENME TLIIPASTWA VFPNIVDAWK RLYSEWVPTS
260 270 280
EYELANLPCI ECYYGPKHKP RHELWVPVIP K
Length:281
Mass (Da):32,519
Last modified:January 1, 1998 - v1
Checksum:i9B0DD1C0D01DEF69
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X92946 Genomic DNA. Translation: CAA63517.1.
RefSeqiYP_001429532.1. NC_009751.1.

Genome annotation databases

GeneIDi5522428.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X92946 Genomic DNA. Translation: CAA63517.1.
RefSeqiYP_001429532.1. NC_009751.1.

3D structure databases

ProteinModelPortaliO32788.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi5522428.

Family and domain databases

Gene3Di3.20.80.10. 1 hit.
InterProiView protein in InterPro
IPR010499. AraC_E-bd.
IPR029442. GyrI-like.
IPR009057. Homeobox-like.
IPR018060. HTH_AraC.
IPR018062. HTH_AraC-typ_CS.
IPR011256. Reg_factor_effector_dom.
IPR020449. Tscrpt_reg_HTH_AraC-type.
PfamiView protein in Pfam
PF06445. GyrI-like. 1 hit.
PF12833. HTH_18. 1 hit.
PRINTSiPR00032. HTHARAC.
SMARTiView protein in SMART
SM00871. AraC_E_bind. 1 hit.
SM00342. HTH_ARAC. 1 hit.
SUPFAMiSSF46689. SSF46689. 2 hits.
PROSITEiView protein in PROSITE
PS00041. HTH_ARAC_FAMILY_1. 1 hit.
PS01124. HTH_ARAC_FAMILY_2. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiO32788_9LACT
AccessioniPrimary (citable) accession number: O32788
Entry historyiIntegrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: May 10, 2017
This is version 94 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

PlasmidImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.