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Protein
Submitted name:

Uncharacterized protein

Gene

ORF17

Organism
Lactococcus lactis
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:ORF17Imported
Encoded oniPlasmid pK214Imported
OrganismiLactococcus lactisImported
Taxonomic identifieri1358 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesStreptococcaceaeLactococcus

Structurei

3D structure databases

ProteinModelPortaliO32788.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini8 – 10699HTH araC/xylS-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains HTH araC/xylS-type DNA-binding domain.SAAS annotation

Phylogenomic databases

KOiK13653.

Family and domain databases

Gene3Di1.10.10.60. 2 hits.
3.20.80.10. 1 hit.
InterProiIPR010499. AraC_E-bd.
IPR029442. GyrI-like.
IPR009057. Homeodomain-like.
IPR018060. HTH_AraC.
IPR018062. HTH_AraC-typ_CS.
IPR011256. Reg_factor_effector_dom.
IPR020449. Tscrpt_reg_HTH_AraC-type.
[Graphical view]
PfamiPF06445. GyrI-like. 1 hit.
PF12833. HTH_18. 1 hit.
[Graphical view]
PRINTSiPR00032. HTHARAC.
SMARTiSM00871. AraC_E_bind. 1 hit.
SM00342. HTH_ARAC. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 2 hits.
SSF55136. SSF55136. 1 hit.
PROSITEiPS00041. HTH_ARAC_FAMILY_1. 1 hit.
PS01124. HTH_ARAC_FAMILY_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O32788-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDWLERMNNA LNYIENSLNE EIDYKEIAKA ANCSEFHFSR MFSSISGISL
60 70 80 90 100
SEYIRRRRLT LAAFEIQKSD IRIIDVAIKY GYVSSDTFSR AFQKMHGVTP
110 120 130 140 150
SNARNRGVQL KAFPRISFQI SIKGDTEMEY RIENLDFELR IVGKSKPVKT
160 170 180 190 200
SRAFKTIPTL WNTAKKDGFM QELVDMSWEN PKCTLESLLG VCGKEAAITD
210 220 230 240 250
EQFSYFMGVR YDGESPENME TLIIPASTWA VFPNIVDAWK RLYSEWVPTS
260 270 280
EYELANLPCI ECYYGPKHKP RHELWVPVIP K
Length:281
Mass (Da):32,519
Last modified:January 1, 1998 - v1
Checksum:i9B0DD1C0D01DEF69
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X92946 Genomic DNA. Translation: CAA63517.1.
RefSeqiYP_001429532.1. NC_009751.1.

Genome annotation databases

GeneIDi5522428.
KEGGipg:5522428.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X92946 Genomic DNA. Translation: CAA63517.1.
RefSeqiYP_001429532.1. NC_009751.1.

3D structure databases

ProteinModelPortaliO32788.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi5522428.
KEGGipg:5522428.

Phylogenomic databases

KOiK13653.

Family and domain databases

Gene3Di1.10.10.60. 2 hits.
3.20.80.10. 1 hit.
InterProiIPR010499. AraC_E-bd.
IPR029442. GyrI-like.
IPR009057. Homeodomain-like.
IPR018060. HTH_AraC.
IPR018062. HTH_AraC-typ_CS.
IPR011256. Reg_factor_effector_dom.
IPR020449. Tscrpt_reg_HTH_AraC-type.
[Graphical view]
PfamiPF06445. GyrI-like. 1 hit.
PF12833. HTH_18. 1 hit.
[Graphical view]
PRINTSiPR00032. HTHARAC.
SMARTiSM00871. AraC_E_bind. 1 hit.
SM00342. HTH_ARAC. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 2 hits.
SSF55136. SSF55136. 1 hit.
PROSITEiPS00041. HTH_ARAC_FAMILY_1. 1 hit.
PS01124. HTH_ARAC_FAMILY_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO32788_9LACT
AccessioniPrimary (citable) accession number: O32788
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: February 17, 2016
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

PlasmidImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.