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Protein

Uncharacterized lipoprotein YpdI

Gene

ypdI

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

  • colanic acid biosynthetic process Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7239-MONOMER.
ECOL316407:JW2373-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized lipoprotein YpdI
Gene namesi
Name:ypdI
Ordered Locus Names:b2376, JW2373
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318 Componenti: Chromosome UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14376. ypdI.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1818PROSITE-ProRule annotationAdd
BLAST
Chaini19 – 9173Uncharacterized lipoprotein YpdIPRO_0000018059Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Lipidationi19 – 191N-palmitoyl cysteinePROSITE-ProRule annotation
Lipidationi19 – 191S-diacylglycerol cysteinePROSITE-ProRule annotation

Keywords - PTMi

Lipoprotein, Palmitate

Proteomic databases

PRIDEiO32528.

Interactioni

Protein-protein interaction databases

DIPiDIP-12820N.
IntActiO32528. 1 interaction.
STRINGi511145.b2376.

Structurei

3D structure databases

ProteinModelPortaliO32528.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

HOGENOMiHOG000122912.
OMAiSTKANYL.
OrthoDBiEOG64BQC6.

Family and domain databases

PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O32528-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKVNLILFSL FLLVSIMACN VFAFSISGGG SERSYKETEK TSAMTTTHST
60 70 80 90
KLQPSQAILF KMREDAPPLN LTEEMPPPFP TKANYLIHPV R
Length:91
Mass (Da):10,162
Last modified:January 1, 1998 - v1
Checksum:i49D63F669C31309D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75435.1.
AP009048 Genomic DNA. Translation: BAE76706.1.
PIRiE65011.
RefSeqiNP_416877.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAC75435; AAC75435; b2376.
BAE76706; BAE76706; BAE76706.
GeneIDi949107.
KEGGiecj:Y75_p2343.
eco:b2376.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75435.1.
AP009048 Genomic DNA. Translation: BAE76706.1.
PIRiE65011.
RefSeqiNP_416877.1. NC_000913.3.

3D structure databases

ProteinModelPortaliO32528.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-12820N.
IntActiO32528. 1 interaction.
STRINGi511145.b2376.

Proteomic databases

PRIDEiO32528.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75435; AAC75435; b2376.
BAE76706; BAE76706; BAE76706.
GeneIDi949107.
KEGGiecj:Y75_p2343.
eco:b2376.

Organism-specific databases

EchoBASEiEB4119.
EcoGeneiEG14376. ypdI.

Phylogenomic databases

HOGENOMiHOG000122912.
OMAiSTKANYL.
OrthoDBiEOG64BQC6.

Enzyme and pathway databases

BioCyciEcoCyc:G7239-MONOMER.
ECOL316407:JW2373-MONOMER.

Miscellaneous databases

PROiO32528.

Family and domain databases

PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYPDI_ECOLI
AccessioniPrimary (citable) accession number: O32528
Secondary accession number(s): Q2MAK0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: January 1, 1998
Last modified: June 24, 2015
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.