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Protein

Transcriptional repressor SdpR

Gene

sdpR

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Represses the transcription of the sdpIR operon and of several other operons that probably contribute to delaying commitment to sporulation.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi39 – 62H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding, Repressor
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciBSUB:BSU33790-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Transcriptional repressor SdpR
Gene namesi
Name:sdpR
Synonyms:yvbA
Ordered Locus Names:BSU33790
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003127451 – 90Transcriptional repressor SdpRAdd BLAST90

Proteomic databases

PaxDbiO32242
PRIDEiO32242

Expressioni

Inductioni

By Spo0A during nutrient starvation through its direct negative control of AbrB, repressed by AbrB during regular growth when nutrients are plentiful (PubMed:16469701). Represses its own transcription (PubMed:16469701). Induced by expression of SDP (active peptide of sdpC) (PubMed:16469701, PubMed:23687264).1 Publication

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100018331

Structurei

3D structure databases

ProteinModelPortaliO32242
SMRiO32242
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 87HTH arsR-typePROSITE-ProRule annotationAdd BLAST87

Phylogenomic databases

eggNOGiENOG41082BM Bacteria
COG0640 LUCA
HOGENOMiHOG000144508
InParanoidiO32242
OMAiMNLRRDV
PhylomeDBiO32242

Family and domain databases

CDDicd00090 HTH_ARSR, 1 hit
Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR011991 ArsR-like_HTH
IPR001845 HTH_ArsR_DNA-bd_dom
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF01022 HTH_5, 1 hit
PRINTSiPR00778 HTHARSR
SMARTiView protein in SMART
SM00418 HTH_ARSR, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50987 HTH_ARSR_2, 1 hit

Sequencei

Sequence statusi: Complete.

O32242-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNNVFKAISD PTRRKILDLL KGGDMTAGDI AEHFNISKPS ISHHLNILKQ
60 70 80 90
AEVISDHRKG QFIYYSLNTT VLQDSINWML NFINKGDNDL
Length:90
Mass (Da):10,243
Last modified:January 1, 1998 - v1
Checksum:iE2008BDD17975113
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA Translation: CAB15384.1
PIRiD70029
RefSeqiNP_391259.1, NC_000964.3
WP_003243541.1, NZ_JNCM01000033.1

Genome annotation databases

EnsemblBacteriaiCAB15384; CAB15384; BSU33790
GeneIDi936249
KEGGibsu:BSU33790
PATRICifig|224308.179.peg.3664

Similar proteinsi

Entry informationi

Entry nameiSDPR_BACSU
AccessioniPrimary (citable) accession number: O32242
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 4, 2007
Last sequence update: January 1, 1998
Last modified: January 31, 2018
This is version 110 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

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