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Protein

Uncharacterized HTH-type transcriptional regulator YusO

Gene

yusO

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi54 – 7724H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU32870-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YusO
Gene namesi
Name:yusO
Ordered Locus Names:BSU32870
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 155155Uncharacterized HTH-type transcriptional regulator YusOPRO_0000360555Add
BLAST

Proteomic databases

PaxDbiO32181.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100017841.

Structurei

Secondary structure

1
155
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi4 – 3229Combined sources
Helixi37 – 4913Combined sources
Beta strandi50 – 534Combined sources
Helixi54 – 618Combined sources
Helixi65 – 7713Combined sources
Beta strandi80 – 856Combined sources
Beta strandi92 – 976Combined sources
Helixi99 – 12022Combined sources
Helixi125 – 14319Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1S3JX-ray2.25A/B1-155[»]
ProteinModelPortaliO32181.
SMRiO32181. Positions 3-145.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO32181.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini4 – 140137HTH marR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH marR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG41067TZ. Bacteria.
ENOG410XUB6. LUCA.
HOGENOMiHOG000292199.
InParanoidiO32181.
OMAiTHNTKDR.
OrthoDBiEOG6M9F3P.
PhylomeDBiO32181.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.10.287.100. 1 hit.
InterProiIPR000835. HTH_MarR-typ.
IPR013028. TFIIA_asu_N.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01047. MarR. 1 hit.
[Graphical view]
PRINTSiPR00598. HTHMARR.
SMARTiSM00347. HTH_MARR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50995. HTH_MARR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O32181-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSADQLMSD IQLSLQALFQ KIQPEMLESM EKQGVTPAQL FVLASLKKHG
60 70 80 90 100
SLKVSEIAER MEVKPSAVTL MADRLEQKNL IARTHNTKDR RVIDLSLTDE
110 120 130 140 150
GDIKFEEVLA GRKAIMARYL SFLTEEEMLQ AAHITAKLAQ AAETDEKQNM

KRGNG
Length:155
Mass (Da):17,400
Last modified:January 1, 1998 - v1
Checksum:i21B31E4B1E4ED0BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB15276.1.
PIRiH70021.
RefSeqiNP_391166.1. NC_000964.3.
WP_003242592.1. NZ_JNCM01000033.1.

Genome annotation databases

EnsemblBacteriaiCAB15276; CAB15276; BSU32870.
GeneIDi935923.
KEGGibsu:BSU32870.
PATRICi18978558. VBIBacSub10457_3442.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB15276.1.
PIRiH70021.
RefSeqiNP_391166.1. NC_000964.3.
WP_003242592.1. NZ_JNCM01000033.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1S3JX-ray2.25A/B1-155[»]
ProteinModelPortaliO32181.
SMRiO32181. Positions 3-145.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100017841.

Proteomic databases

PaxDbiO32181.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB15276; CAB15276; BSU32870.
GeneIDi935923.
KEGGibsu:BSU32870.
PATRICi18978558. VBIBacSub10457_3442.

Phylogenomic databases

eggNOGiENOG41067TZ. Bacteria.
ENOG410XUB6. LUCA.
HOGENOMiHOG000292199.
InParanoidiO32181.
OMAiTHNTKDR.
OrthoDBiEOG6M9F3P.
PhylomeDBiO32181.

Enzyme and pathway databases

BioCyciBSUB:BSU32870-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO32181.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.10.287.100. 1 hit.
InterProiIPR000835. HTH_MarR-typ.
IPR013028. TFIIA_asu_N.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01047. MarR. 1 hit.
[Graphical view]
PRINTSiPR00598. HTHMARR.
SMARTiSM00347. HTH_MARR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50995. HTH_MARR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiYUSO_BACSU
AccessioniPrimary (citable) accession number: O32181
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 1, 1998
Last modified: February 17, 2016
This is version 101 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.