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Protein

Uncharacterized HTH-type transcriptional regulator YurK

Gene

yurK

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi36 – 55H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU32560-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YurK
Gene namesi
Name:yurK
Ordered Locus Names:BSU32560
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000506911 – 242Uncharacterized HTH-type transcriptional regulator YurKAdd BLAST242

Proteomic databases

PaxDbiO32152.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100017666.

Structurei

Secondary structure

1242
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi102 – 110Combined sources9
Helixi113 – 119Combined sources7
Beta strandi126 – 149Combined sources24
Turni150 – 152Combined sources3
Helixi156 – 159Combined sources4
Helixi166 – 174Combined sources9
Beta strandi180 – 189Combined sources10
Helixi192 – 198Combined sources7
Beta strandi205 – 215Combined sources11
Helixi216 – 218Combined sources3
Beta strandi219 – 229Combined sources11
Turni230 – 232Combined sources3
Beta strandi233 – 237Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2IKKX-ray1.80A/B94-242[»]
ProteinModelPortaliO32152.
SMRiO32152.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO32152.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 76HTH gntR-typePROSITE-ProRule annotationAdd BLAST69

Sequence similaritiesi

Contains 1 HTH gntR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105FDP. Bacteria.
COG2188. LUCA.
HOGENOMiHOG000228717.
InParanoidiO32152.
OMAiQVVPTHN.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
[Graphical view]
PRINTSiPR00035. HTHGNTR.
SMARTiSM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O32152-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLNNGSSTPL YIQLKQIITD DIKKGVYSPT AKLPTENELC TKYNVSRITV
60 70 80 90 100
RKAILDLVEE GYLIRQQGKG TFVKSPKLKR ELIAVNGYSE FMESTGKKPK
110 120 130 140 150
HHVLSHDIIP ASKPIAEKLQ IQPESPVVEL KRILYNDDQP LTFEVTHYPL
160 170 180 190 200
DLFPGIDTFI ADGVSMHDIL KQQYKVVPTH NTKLLNVVYA QQEESKYLDC
210 220 230 240
DIGDALFEID KTAFTSNDQP IYCSLFLMHT NRVTFTINSP YT
Length:242
Mass (Da):27,510
Last modified:January 1, 1998 - v1
Checksum:i0CD47CCAF9E9F9A0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB15246.1.
PIRiB70018.
RefSeqiWP_003228628.1. NZ_JNCM01000033.1.

Genome annotation databases

EnsemblBacteriaiCAB15246; CAB15246; BSU32560.
PATRICi38341557. VBIBacSub146942_3266.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB15246.1.
PIRiB70018.
RefSeqiWP_003228628.1. NZ_JNCM01000033.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2IKKX-ray1.80A/B94-242[»]
ProteinModelPortaliO32152.
SMRiO32152.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100017666.

Proteomic databases

PaxDbiO32152.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB15246; CAB15246; BSU32560.
PATRICi38341557. VBIBacSub146942_3266.

Phylogenomic databases

eggNOGiENOG4105FDP. Bacteria.
COG2188. LUCA.
HOGENOMiHOG000228717.
InParanoidiO32152.
OMAiQVVPTHN.

Enzyme and pathway databases

BioCyciBSUB:BSU32560-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO32152.
PROiO32152.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
[Graphical view]
PRINTSiPR00035. HTHGNTR.
SMARTiSM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYURK_BACSU
AccessioniPrimary (citable) accession number: O32152
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: January 1, 1998
Last modified: November 2, 2016
This is version 115 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.