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Protein

Uncharacterized HTH-type transcriptional regulator YtdP

Gene

ytdP

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi687 – 70822H-T-H motifPROSITE-ProRule annotationAdd
BLAST
DNA bindingi735 – 75824H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU30150-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YtdP
Gene namesi
Name:ytdP
Ordered Locus Names:BSU30150
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei16 – 3621HelicalSequence analysisAdd
BLAST
Transmembranei301 – 32121HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 772772Uncharacterized HTH-type transcriptional regulator YtdPPRO_0000365022Add
BLAST

Proteomic databases

PaxDbiO32071.

Interactioni

Protein-protein interaction databases

IntActiO32071. 17 interactions.
STRINGi224308.Bsubs1_010100016426.

Structurei

3D structure databases

ProteinModelPortaliO32071.
SMRiO32071. Positions 666-770.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini670 – 76899HTH araC/xylS-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH araC/xylS-type DNA-binding domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG41075H3. Bacteria.
COG2207. LUCA.
HOGENOMiHOG000011103.
OMAiHYNPNYL.
OrthoDBiEOG632CZJ.
PhylomeDBiO32071.

Family and domain databases

Gene3Di1.10.10.60. 2 hits.
InterProiIPR009057. Homeodomain-like.
IPR018060. HTH_AraC.
[Graphical view]
PfamiPF12833. HTH_18. 1 hit.
[Graphical view]
SMARTiSM00342. HTH_ARAC. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 2 hits.
PROSITEiPS01124. HTH_ARAC_FAMILY_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O32071-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGGFMKRSQY KFYYKLITFF CLLSTIPVIL VGLFSYEHSQ KTAISNVSEE
60 70 80 90 100
KFDTLQQTQQ SIEHILKTVD HSLTHYVSSP PLLRTLSEPL HSDQFQIYNQ
110 120 130 140 150
VNQELNYLQS FDTDLSNMTL VSYTKKWYMN NSGLYRLNTD TLHEAASAYT
160 170 180 190 200
KQKASRSYWT LEENNHLIST KEGTAENCRY NINLIKQLPL NSTNTKGLAA
210 220 230 240 250
ASIPSCSLVK NMPGYSNANN LFIIDEKGLI ILHNNMSDVG ESLHNDGFVQ
260 270 280 290 300
KVLAQTANSG QFETVIDRIH YKVTYQKSDY NAWTYFSLVS LPELKKEAKS
310 320 330 340 350
IGWITFAVCL ILLTLSLLFS WLGSRHFYKP IRVLYESFAR HGAIQEKQQP
360 370 380 390 400
PQNEFELIEQ SFKQLKDRND DLEETMKQQA THLQQYFMVR LMLGKLTDEE
410 420 430 440 450
VDNRFESLGL KQNWRHLALL VLQIDTLNHT PYEKKDMDLL LFAVNSLIER
460 470 480 490 500
NIPTDKHLAP AVVDKQQATI LINQSGTKEE FMAELNETAR MIQEKAEAEL
510 520 530 540 550
QLSVSIGISQ PFDVLTKAKT AYAEGSEALK YRLKAENKSI IFYEDLDQKK
560 570 580 590 600
TFKTHFPKQL QHELFDAVKA GDKEKADKCL HAILQAIFTQ NTNPYQFQIA
610 620 630 640 650
IARFLNHVIE LMHVLGIELF ELEENKMLYD QIFELKTFED TENWLKNEFI
660 670 680 690 700
DPMTDKVNAR ADAQYKNISD NIIHIIHHEF ESELTLDEIA RRLHYNPNYL
710 720 730 740 750
SSIFKKEMGI SFSEYVSSYR HHMAKSWLAE TDMAVKDIAE KLKYKNSQNF
760 770
IRSFKKLEGI TPGNYRQQKR SM
Length:772
Mass (Da):89,545
Last modified:January 1, 1998 - v1
Checksum:i72A03AC2B8E158D6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB14993.1.
PIRiC69990.
RefSeqiNP_390893.1. NC_000964.3.
WP_009968004.1. NZ_JNCM01000036.1.

Genome annotation databases

EnsemblBacteriaiCAB14993; CAB14993; BSU30150.
GeneIDi936234.
KEGGibsu:BSU30150.
PATRICi18977932. VBIBacSub10457_3154.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB14993.1.
PIRiC69990.
RefSeqiNP_390893.1. NC_000964.3.
WP_009968004.1. NZ_JNCM01000036.1.

3D structure databases

ProteinModelPortaliO32071.
SMRiO32071. Positions 666-770.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO32071. 17 interactions.
STRINGi224308.Bsubs1_010100016426.

Proteomic databases

PaxDbiO32071.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB14993; CAB14993; BSU30150.
GeneIDi936234.
KEGGibsu:BSU30150.
PATRICi18977932. VBIBacSub10457_3154.

Phylogenomic databases

eggNOGiENOG41075H3. Bacteria.
COG2207. LUCA.
HOGENOMiHOG000011103.
OMAiHYNPNYL.
OrthoDBiEOG632CZJ.
PhylomeDBiO32071.

Enzyme and pathway databases

BioCyciBSUB:BSU30150-MONOMER.

Family and domain databases

Gene3Di1.10.10.60. 2 hits.
InterProiIPR009057. Homeodomain-like.
IPR018060. HTH_AraC.
[Graphical view]
PfamiPF12833. HTH_18. 1 hit.
[Graphical view]
SMARTiSM00342. HTH_ARAC. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 2 hits.
PROSITEiPS01124. HTH_ARAC_FAMILY_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiYTDP_BACSU
AccessioniPrimary (citable) accession number: O32071
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 3, 2009
Last sequence update: January 1, 1998
Last modified: February 17, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.