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Protein

Uncharacterized HTH-type transcriptional regulator YtdP

Gene

ytdP

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi687 – 708H-T-H motifPROSITE-ProRule annotationAdd BLAST22
DNA bindingi735 – 758H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciBSUB:BSU30150-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YtdP
Gene namesi
Name:ytdP
Ordered Locus Names:BSU30150
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei16 – 36HelicalSequence analysisAdd BLAST21
Transmembranei301 – 321HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003650221 – 772Uncharacterized HTH-type transcriptional regulator YtdPAdd BLAST772

Proteomic databases

PaxDbiO32071
PRIDEiO32071

Interactioni

Protein-protein interaction databases

IntActiO32071, 17 interactors
STRINGi224308.Bsubs1_010100016426

Structurei

3D structure databases

ProteinModelPortaliO32071
SMRiO32071
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini670 – 768HTH araC/xylS-typePROSITE-ProRule annotationAdd BLAST99

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG41075H3 Bacteria
COG2207 LUCA
HOGENOMiHOG000011103
OMAiYNPNYLS
PhylomeDBiO32071

Family and domain databases

InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR018060 HTH_AraC
PfamiView protein in Pfam
PF12833 HTH_18, 1 hit
SMARTiView protein in SMART
SM00342 HTH_ARAC, 1 hit
SUPFAMiSSF46689 SSF46689, 2 hits
PROSITEiView protein in PROSITE
PS01124 HTH_ARAC_FAMILY_2, 1 hit

Sequencei

Sequence statusi: Complete.

O32071-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGGFMKRSQY KFYYKLITFF CLLSTIPVIL VGLFSYEHSQ KTAISNVSEE
60 70 80 90 100
KFDTLQQTQQ SIEHILKTVD HSLTHYVSSP PLLRTLSEPL HSDQFQIYNQ
110 120 130 140 150
VNQELNYLQS FDTDLSNMTL VSYTKKWYMN NSGLYRLNTD TLHEAASAYT
160 170 180 190 200
KQKASRSYWT LEENNHLIST KEGTAENCRY NINLIKQLPL NSTNTKGLAA
210 220 230 240 250
ASIPSCSLVK NMPGYSNANN LFIIDEKGLI ILHNNMSDVG ESLHNDGFVQ
260 270 280 290 300
KVLAQTANSG QFETVIDRIH YKVTYQKSDY NAWTYFSLVS LPELKKEAKS
310 320 330 340 350
IGWITFAVCL ILLTLSLLFS WLGSRHFYKP IRVLYESFAR HGAIQEKQQP
360 370 380 390 400
PQNEFELIEQ SFKQLKDRND DLEETMKQQA THLQQYFMVR LMLGKLTDEE
410 420 430 440 450
VDNRFESLGL KQNWRHLALL VLQIDTLNHT PYEKKDMDLL LFAVNSLIER
460 470 480 490 500
NIPTDKHLAP AVVDKQQATI LINQSGTKEE FMAELNETAR MIQEKAEAEL
510 520 530 540 550
QLSVSIGISQ PFDVLTKAKT AYAEGSEALK YRLKAENKSI IFYEDLDQKK
560 570 580 590 600
TFKTHFPKQL QHELFDAVKA GDKEKADKCL HAILQAIFTQ NTNPYQFQIA
610 620 630 640 650
IARFLNHVIE LMHVLGIELF ELEENKMLYD QIFELKTFED TENWLKNEFI
660 670 680 690 700
DPMTDKVNAR ADAQYKNISD NIIHIIHHEF ESELTLDEIA RRLHYNPNYL
710 720 730 740 750
SSIFKKEMGI SFSEYVSSYR HHMAKSWLAE TDMAVKDIAE KLKYKNSQNF
760 770
IRSFKKLEGI TPGNYRQQKR SM
Length:772
Mass (Da):89,545
Last modified:January 1, 1998 - v1
Checksum:i72A03AC2B8E158D6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA Translation: CAB14993.1
PIRiC69990
RefSeqiNP_390893.1, NC_000964.3
WP_009968004.1, NZ_JNCM01000036.1

Genome annotation databases

EnsemblBacteriaiCAB14993; CAB14993; BSU30150
GeneIDi936234
KEGGibsu:BSU30150
PATRICifig|224308.179.peg.3271

Entry informationi

Entry nameiYTDP_BACSU
AccessioniPrimary (citable) accession number: O32071
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 3, 2009
Last sequence update: January 1, 1998
Last modified: May 23, 2018
This is version 115 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

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