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O32041

- YRVJ_BACSU

UniProt

O32041 - YRVJ_BACSU

Protein

Putative N-acetylmuramoyl-L-alanine amidase YrvJ

Gene

yrvJ

Organism
Bacillus subtilis (strain 168)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 84 (01 Oct 2014)
      Sequence version 1 (01 Jan 1998)
      Previous versions | rss
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    Functioni

    Probably involved in cell-wall metabolism.By similarity

    Catalytic activityi

    Hydrolyzes the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides.

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. N-acetylmuramoyl-L-alanine amidase activity Source: UniProtKB-EC

    GO - Biological processi

    1. peptidoglycan catabolic process Source: InterPro

    Keywords - Molecular functioni

    Hydrolase

    Keywords - Biological processi

    Cell wall biogenesis/degradation

    Keywords - Ligandi

    Metal-binding, Zinc

    Enzyme and pathway databases

    BioCyciBSUB:BSU27580-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative N-acetylmuramoyl-L-alanine amidase YrvJ (EC:3.5.1.28)
    Gene namesi
    Name:yrvJ
    Ordered Locus Names:BSU27580
    OrganismiBacillus subtilis (strain 168)
    Taxonomic identifieri224308 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000001570: Chromosome

    Organism-specific databases

    GenoListiBSU27580.

    Subcellular locationi

    Secretedcell wall By similarity

    GO - Cellular componenti

    1. cell wall Source: UniProtKB-SubCell
    2. extracellular region Source: UniProtKB-KW

    Keywords - Cellular componenti

    Cell wall, Secreted

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2727Sequence AnalysisAdd
    BLAST
    Chaini28 – 518491Putative N-acetylmuramoyl-L-alanine amidase YrvJPRO_0000360805Add
    BLAST

    Proteomic databases

    PaxDbiO32041.

    Interactioni

    Protein-protein interaction databases

    STRINGi224308.BSU27580.

    Structurei

    3D structure databases

    ProteinModelPortaliO32041.
    SMRiO32041. Positions 29-166, 181-320, 344-518.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiCOG0860.
    HOGENOMiHOG000018078.
    KOiK01448.
    OMAiTSHYRNA.
    OrthoDBiEOG6CP3X3.
    PhylomeDBiO32041.

    Family and domain databases

    Gene3Di3.40.630.40. 1 hit.
    InterProiIPR002508. CW_Hdrlase/autolysin_cat.
    IPR017293. N-acetylmuramoyl-L-ala_amidase.
    IPR003646. SH3-like_bac-type.
    [Graphical view]
    PfamiPF01520. Amidase_3. 1 hit.
    PF08239. SH3_3. 4 hits.
    [Graphical view]
    PIRSFiPIRSF037846. Autolysin_YrvJ_prd. 1 hit.
    SMARTiSM00646. Ami_3. 1 hit.
    SM00287. SH3b. 4 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    O32041-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNKKYFVLIV CIIFTSALFP TFSSVTAAQG EAVIATDEMN VRSGPGLSYG    50
    ITAEVKKGER YPILKEDGDW VQIQLGSGEK GWVVSWLITK EDQASTSSSG 100
    SSDTVTSTDP DLRMRSGPGT SYEVIGKFPQ GSQASVIDKD SGWIKISYHS 150
    ATGWVSSEYV TSGGSSSASD ESDQTEDSGA STTGTVGVSS LNVRASASHD 200
    AAIITKLDRG TKLTVLNEKN GWAHIEVNGL KGWVASHYLL TSSVPADDSA 250
    NAGSSSSAKK AYIMYGGTNL RSDASTSASI VERAAKGDSY TITGSKGSWY 300
    EIKLDNGQTA YVANWVVQTS KSAEEAGEPP VSDSPSGNGS LNNKTIIVDP 350
    GHGGKDSGTI GYSGKFEKNL TIKTAKLLAS KLRSAGADVY VTRQDDTFVS 400
    LQSRVSTSHY RNADAFISIH YDSYADTSTR GSTAYYYSPA KDQELASDVH 450
    SEVVKRSSIP DRGVLFGDYY VLRENRQPAM LYELGYVSHP QEEAIVHSNS 500
    YQEKVTDGIE SGLEKYFQ 518
    Length:518
    Mass (Da):55,501
    Last modified:January 1, 1998 - v1
    Checksum:i8FE642A3D7724135
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL009126 Genomic DNA. Translation: CAB14717.1.
    PIRiB69981.
    RefSeqiNP_390636.1. NC_000964.3.

    Genome annotation databases

    EnsemblBacteriaiCAB14717; CAB14717; BSU27580.
    GeneIDi937544.
    KEGGibsu:BSU27580.
    PATRICi18977380. VBIBacSub10457_2879.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL009126 Genomic DNA. Translation: CAB14717.1 .
    PIRi B69981.
    RefSeqi NP_390636.1. NC_000964.3.

    3D structure databases

    ProteinModelPortali O32041.
    SMRi O32041. Positions 29-166, 181-320, 344-518.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 224308.BSU27580.

    Proteomic databases

    PaxDbi O32041.

    Protocols and materials databases

    DNASUi 937544.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAB14717 ; CAB14717 ; BSU27580 .
    GeneIDi 937544.
    KEGGi bsu:BSU27580.
    PATRICi 18977380. VBIBacSub10457_2879.

    Organism-specific databases

    GenoListi BSU27580.

    Phylogenomic databases

    eggNOGi COG0860.
    HOGENOMi HOG000018078.
    KOi K01448.
    OMAi TSHYRNA.
    OrthoDBi EOG6CP3X3.
    PhylomeDBi O32041.

    Enzyme and pathway databases

    BioCyci BSUB:BSU27580-MONOMER.

    Family and domain databases

    Gene3Di 3.40.630.40. 1 hit.
    InterProi IPR002508. CW_Hdrlase/autolysin_cat.
    IPR017293. N-acetylmuramoyl-L-ala_amidase.
    IPR003646. SH3-like_bac-type.
    [Graphical view ]
    Pfami PF01520. Amidase_3. 1 hit.
    PF08239. SH3_3. 4 hits.
    [Graphical view ]
    PIRSFi PIRSF037846. Autolysin_YrvJ_prd. 1 hit.
    SMARTi SM00646. Ami_3. 1 hit.
    SM00287. SH3b. 4 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
      Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
      , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
      Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 168.

    Entry informationi

    Entry nameiYRVJ_BACSU
    AccessioniPrimary (citable) accession number: O32041
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 20, 2009
    Last sequence update: January 1, 1998
    Last modified: October 1, 2014
    This is version 84 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Bacillus subtilis
      Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3