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Protein

SPBc2 prophage-derived uncharacterized transglycosylase YomI

Gene

yomI

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei1447 – 14471PROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Lyase

Enzyme and pathway databases

BioCyciBSUB:BSU21350-MONOMER.

Protein family/group databases

CAZyiGH23. Glycoside Hydrolase Family 23.
MEROPSiM23.A04.

Names & Taxonomyi

Protein namesi
Recommended name:
SPBc2 prophage-derived uncharacterized transglycosylase YomI (EC:4.2.2.-)
Gene namesi
Name:yomI
Ordered Locus Names:BSU21350
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 22852285SPBc2 prophage-derived uncharacterized transglycosylase YomIPRO_0000360831Add
BLAST

Proteomic databases

PaxDbiO31976.

Interactioni

Protein-protein interaction databases

IntActiO31976. 1 interaction.
STRINGi224308.Bsubs1_010100011756.

Structurei

3D structure databases

ProteinModelPortaliO31976.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati37 – 7135TPR 1Add
BLAST
Repeati231 – 26434TPR 2Add
BLAST
Repeati519 – 55335TPR 3Add
BLAST
Repeati609 – 64234TPR 4Add
BLAST
Repeati837 – 87135TPR 5Add
BLAST
Repeati1079 – 111234TPR 6Add
BLAST
Repeati1317 – 135034TPR 7Add
BLAST
Repeati1484 – 151734TPR 8Add
BLAST
Repeati1719 – 175234TPR 9Add
BLAST
Repeati1851 – 188434TPR 10Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1426 – 1660235TransglycosylaseAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili985 – 103046Sequence analysisAdd
BLAST
Coiled coili1219 – 126244Sequence analysisAdd
BLAST
Coiled coili1790 – 183748Sequence analysisAdd
BLAST
Coiled coili1963 – 2074112Sequence analysisAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi916 – 9194Poly-Asp

Sequence similaritiesi

Belongs to the transglycosylase Slt family.Curated
Contains 10 TPR repeats.Curated

Keywords - Domaini

Coiled coil, Repeat, TPR repeat

Phylogenomic databases

eggNOGiENOG4105E4C. Bacteria.
COG0739. LUCA.
COG0741. LUCA.
OMAiMERESRF.

Family and domain databases

InterProiIPR011055. Dup_hybrid_motif.
IPR023346. Lysozyme-like_dom.
IPR016047. Peptidase_M23.
IPR010090. Phage_tape_meas.
IPR000189. Transglyc_AS.
IPR008258. Transglycosylase_SLT_dom_1.
[Graphical view]
PfamiPF01551. Peptidase_M23. 1 hit.
PF10145. PhageMin_Tail. 1 hit.
PF01464. SLT. 1 hit.
[Graphical view]
SUPFAMiSSF51261. SSF51261. 1 hit.
SSF53955. SSF53955. 1 hit.
TIGRFAMsiTIGR01760. tape_meas_TP901. 1 hit.
PROSITEiPS00922. TRANSGLYCOSYLASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O31976-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQNLKIILT PQADTSSKTV EQLNQQIKSL EKKLNSLKLN TNIDSTTLKA
60 70 80 90 100
LQEFSSAIDT YQKNLKSYNQ TVKETSTVIK NADGSVEKLT QQYKKNGEIL
110 120 130 140 150
QRETKIINNR NTALKQETQE VNKLTQATEK LGQVQKKTVQ RNLQGQPTKV
160 170 180 190 200
VQKNRHGFDD IVYTTDPKTN STSSKTTTNY DQQRRAIEQL KQDLEKLRQQ
210 220 230 240 250
GIVTDTTISS LGRKINTAQS AQQIEALQNR IRMLDDKSAA VAKNNELKKT
260 270 280 290 300
IELYQRQAQV NVQNLNTRYG SSMGSSNRQA VQDYLNAVNS LNVSTGSNNI
310 320 330 340 350
RSQIQSLNMQ FRELASNAQT AANQASSFGA ELTQTFKSMS TYLISGSLFY
360 370 380 390 400
GAISGLKEMV SQAIEIDTLM TNIRRVMNEP DYKYNELLQE SIDLGDTLSN
410 420 430 440 450
KITDILQMTG DFGRMGFDES ELSTLTKTAQ VLQNVSDLTP DDTVNTLTAA
460 470 480 490 500
MLNFNIAAND SISIADKLNE VDNNYAVTTL DLANSIRKAG STASTFGVEL
510 520 530 540 550
NDLIGYTTAI ASTTRESGNI VGNSLKTIFA RIGNNQSSIK ALEQIGISVK
560 570 580 590 600
TAGGEAKSAS DLISEVAGKW DTLSDAQKQN TSIGVAGIYQ LSRFNAMMNN
610 620 630 640 650
FSIAQNAAKT AANSTGSAWS EQQKYADSLQ ARVNKLQNNF TEFAIAASDA
660 670 680 690 700
FISDGLIEFT QAAGSLLNAS TGVIKSVGFL PPLLAAVSTA TLLLSKNTRT
710 720 730 740 750
LASSLILGTR AMGQETLATA GLEAGMTRAA VASRVLKTAL RGLLVSTLVG
760 770 780 790 800
GAFAALGWAL ESLISSFAEA KKAKDDFEQS QQTNVEAITT NKDSTDKLIQ
810 820 830 840 850
QYKELQKVKE SRSLTSDEEQ EYLQVTQQLA QTFPALVKGY DSQGNAILKT
860 870 880 890 900
NKELEKAIEN TKEYLALKKQ ETRDSAKKTF EDASKEIKKS KDELKQYKQI
910 920 930 940 950
ADYNDKGRPK WDLIADDDDY KVAADKAKQS MLKAQSDIES GNAKVKDSVL
960 970 980 990 1000
SIANAYSSID ISNTLKTSIS DVVNKLNLKD DLDPEELEKF SSSLGKLQEK
1010 1020 1030 1040 1050
MQKALDSGDE KAFDNAKKDL QSLLETYSKS DSSIDVFKMS FDKAQKNIKD
1060 1070 1080 1090 1100
GDKSLSSVKS EVGDLGETLA EAGNEAEDFG KKLKEALDAN SVDDIKAAIK
1110 1120 1130 1140 1150
EMSDAMQFDS VQDVLNGDIF NNTKDQVAPL NDLLEKMAEG KSISANEANT
1160 1170 1180 1190 1200
LIQKDKELAQ AISIENGVVK INRDEVIKQR KVKLDAYNDM VTYSNKLMKT
1210 1220 1230 1240 1250
EVNNAIKTLN ADTLRIDSLK KLRKERKLDM SEAELSDLEV KSINNVADAK
1260 1270 1280 1290 1300
KELKKLEEKM LQPGGYSNSQ IEAMQSVKSA LESYISASEE ATSTQEMNKQ
1310 1320 1330 1340 1350
ALVEAGTSLE NWTDQQEKAN EETKTSMYVV DKYKEALEKV NAEIDKYNKQ
1360 1370 1380 1390 1400
VNDYPKYSQK YRDAIKKEIK ALQQKKKLMQ EQAKLLKDQI KSGNITQYGI
1410 1420 1430 1440 1450
VTSTTSSGGT PSSTGGSYSG KYSSYINSAA SKYNVDPALI AAVIQQESGF
1460 1470 1480 1490 1500
NAKARSGVGA MGLMQLMPAT AKSLGVNNAY DPYQNVMGGT KYLAQQLEKF
1510 1520 1530 1540 1550
GGNVEKALAA YNAGPGNVIK YGGIPPFKET QNYVKKIMAN YSKSLSSATS
1560 1570 1580 1590 1600
SIASYYTNNS AFRVSSKYGQ QESGLRSSPH KGTDFAAKAG TAIKSLQSGK
1610 1620 1630 1640 1650
VQIAGYSKTA GNWVVIKQDD GTVAKYMHML NTPSVKAGQS VKAGQTIGKV
1660 1670 1680 1690 1700
GSTGNSTGNH LHLQIEQNGK TIDPEKYMQG IGTSISDASQ AEAERQQGIA
1710 1720 1730 1740 1750
QAKSDLLSLQ GDISSVNDQI QELQYELVQS KLDEFDKRIG DFDVRIAKDE
1760 1770 1780 1790 1800
SMANRYTSDS KEFRKYTSDQ KKAVAEQAKI QQQKVNWIQK EIKTNKALNS
1810 1820 1830 1840 1850
AQRAQLQEEL KQAKLDLISV QDQVRELQKQ LVQSKVDETL KSIEKSSSKT
1860 1870 1880 1890 1900
QGKIKDVDNK ISMTEEDEDK VKYYSKQIKL IQQQQKEAKK YIKQLEEQKK
1910 1920 1930 1940 1950
AAKGFPDIQE QITEEIENWK DKQKDFNLEL YNTKKSIKDI YKSLADEVVS
1960 1970 1980 1990 2000
IYKEMYEKMR DIELEAHQKA TQDLIDEIDK TDDEAKFQKE LKERQDSIQK
2010 2020 2030 2040 2050
LTDQINQYSL DDSEFGKSKV KELTEQLQKE QLDLDDFLKD RESNKRKEAL
2060 2070 2080 2090 2100
QDQLEKDEES INNKYDNLVN DERAFKKLED KIMNGKITDI AKQLNEFSKF
2110 2120 2130 2140 2150
INTNMESIGK SISNNLIDKL KEASNALNTA VKGNTTGKKV SSFASGGYTG
2160 2170 2180 2190 2200
TGLGAGKLAF LHDKELILNK TDTANILDTV KAVRETAVDD SPKWGQGVKL
2210 2220 2230 2240 2250
ADLIKKGITS IPSLVPNVNQ SMLTNSLIPN LKKIEIPSKT IASSGDKTIN
2260 2270 2280
LTNTFHIDKL IGGESGARSM FESIKNEVVK LNGSM
Length:2,285
Mass (Da):252,295
Last modified:July 7, 2009 - v2
Checksum:iA8895DE671F8D03F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB14053.2.
RefSeqiNP_390018.2. NC_000964.3.
WP_004398858.1. NZ_JNCM01000036.1.

Genome annotation databases

EnsemblBacteriaiCAB14053; CAB14053; BSU21350.
GeneIDi939138.
KEGGibsu:BSU21350.
PATRICi18976075. VBIBacSub10457_2228.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB14053.2.
RefSeqiNP_390018.2. NC_000964.3.
WP_004398858.1. NZ_JNCM01000036.1.

3D structure databases

ProteinModelPortaliO31976.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO31976. 1 interaction.
STRINGi224308.Bsubs1_010100011756.

Protein family/group databases

CAZyiGH23. Glycoside Hydrolase Family 23.
MEROPSiM23.A04.

Proteomic databases

PaxDbiO31976.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB14053; CAB14053; BSU21350.
GeneIDi939138.
KEGGibsu:BSU21350.
PATRICi18976075. VBIBacSub10457_2228.

Phylogenomic databases

eggNOGiENOG4105E4C. Bacteria.
COG0739. LUCA.
COG0741. LUCA.
OMAiMERESRF.

Enzyme and pathway databases

BioCyciBSUB:BSU21350-MONOMER.

Family and domain databases

InterProiIPR011055. Dup_hybrid_motif.
IPR023346. Lysozyme-like_dom.
IPR016047. Peptidase_M23.
IPR010090. Phage_tape_meas.
IPR000189. Transglyc_AS.
IPR008258. Transglycosylase_SLT_dom_1.
[Graphical view]
PfamiPF01551. Peptidase_M23. 1 hit.
PF10145. PhageMin_Tail. 1 hit.
PF01464. SLT. 1 hit.
[Graphical view]
SUPFAMiSSF51261. SSF51261. 1 hit.
SSF53955. SSF53955. 1 hit.
TIGRFAMsiTIGR01760. tape_meas_TP901. 1 hit.
PROSITEiPS00922. TRANSGLYCOSYLASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYOMI_BACSU
AccessioniPrimary (citable) accession number: O31976
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: July 7, 2009
Last modified: September 7, 2016
This is version 101 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.