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O31917

- LIGB_BACSU

UniProt

O31917 - LIGB_BACSU

Protein

SPBc2 prophage-derived DNA ligase-like protein LigB

Gene

ligB

Organism
Bacillus subtilis (strain 168)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 78 (01 Oct 2014)
      Sequence version 1 (01 Jan 1998)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei25 – 251N6-AMP-lysine intermediateBy similarity

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA ligase (ATP) activity Source: RefGenome

    GO - Biological processi

    1. DNA ligation Source: RefGenome
    2. DNA recombination Source: InterPro
    3. lagging strand elongation Source: RefGenome
    4. nucleotide-excision repair Source: RefGenome

    Keywords - Molecular functioni

    Ligase

    Keywords - Ligandi

    ATP-binding, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciBSUB:BSU20500-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    SPBc2 prophage-derived DNA ligase-like protein LigB
    Gene namesi
    Name:ligB
    Synonyms:yoqV
    Ordered Locus Names:BSU20500
    OrganismiBacillus subtilis (strain 168)
    Taxonomic identifieri224308 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000001570: Chromosome

    Organism-specific databases

    GenoListiBSU20500. [Micado]

    Subcellular locationi

    GO - Cellular componenti

    1. chromosome Source: RefGenome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 270270SPBc2 prophage-derived DNA ligase-like protein LigBPRO_0000360515Add
    BLAST

    Proteomic databases

    PaxDbiO31917.

    Interactioni

    Protein-protein interaction databases

    STRINGi224308.BSU20500.

    Structurei

    3D structure databases

    ProteinModelPortaliO31917.
    SMRiO31917. Positions 3-270.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.Curated

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000049932.
    KOiK01971.
    OMAiLYTRHNN.
    OrthoDBiEOG6F2971.
    PhylomeDBiO31917.

    Family and domain databases

    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    O31917-1 [UniParc]FASTAAdd to Basket

    « Hide

    MFVSPMLLHS IKEPFNDENY ITELKFDGIR LILSKFDNQI KLYTRHNNEV    50
    TSKFPELMDL DIPDGTVLDG EVIVAASGGA PDFEAVMERF MSKKSAHNIV 100
    YCVFDVIYKD GQSIAAKPLT ERKTVLNSLE LDHPNVFVIE GTQGNGLAYF 150
    NLAKEKNLEG IVIKKANSPY EINKRSHNWL KVINYDYTEV LITGYTKKDI 200
    KFLLSYPDGT SAGFMEFMPH AERTKFHSMK QVKSESDEYV FIEPILCNVK 250
    HRFKTKHGKL RIPSFESWRV 270
    Length:270
    Mass (Da):31,027
    Last modified:January 1, 1998 - v1
    Checksum:iA5667596F87E6355
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL009126 Genomic DNA. Translation: CAB13942.1.
    RefSeqiNP_389932.1. NC_000964.3.

    Genome annotation databases

    EnsemblBacteriaiCAB13942; CAB13942; BSU20500.
    GeneIDi939992.
    KEGGibsu:BSU20500.
    PATRICi18975939. VBIBacSub10457_2160.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL009126 Genomic DNA. Translation: CAB13942.1 .
    RefSeqi NP_389932.1. NC_000964.3.

    3D structure databases

    ProteinModelPortali O31917.
    SMRi O31917. Positions 3-270.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 224308.BSU20500.

    Proteomic databases

    PaxDbi O31917.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAB13942 ; CAB13942 ; BSU20500 .
    GeneIDi 939992.
    KEGGi bsu:BSU20500.
    PATRICi 18975939. VBIBacSub10457_2160.

    Organism-specific databases

    GenoListi BSU20500. [Micado ]

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000049932.
    KOi K01971.
    OMAi LYTRHNN.
    OrthoDBi EOG6F2971.
    PhylomeDBi O31917.

    Enzyme and pathway databases

    BioCyci BSUB:BSU20500-MONOMER.

    Family and domain databases

    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
      Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
      , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
      Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 168.

    Entry informationi

    Entry nameiLIGB_BACSU
    AccessioniPrimary (citable) accession number: O31917
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 20, 2009
    Last sequence update: January 1, 1998
    Last modified: October 1, 2014
    This is version 78 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Bacillus subtilis
      Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3