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Protein

SPBc2 prophage-derived DNA ligase-like protein LigB

Gene

ligB

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei25 – 251N6-AMP-lysine intermediateBy similarity

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA ligase (ATP) activity Source: GO_Central

GO - Biological processi

  1. DNA ligation Source: GO_Central
  2. DNA recombination Source: InterPro
  3. lagging strand elongation Source: GO_Central
  4. nucleotide-excision repair Source: GO_Central
Complete GO annotation...

Keywords - Molecular functioni

Ligase

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciBSUB:BSU20500-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
SPBc2 prophage-derived DNA ligase-like protein LigB
Gene namesi
Name:ligB
Synonyms:yoqV
Ordered Locus Names:BSU20500
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001570: Chromosome

Organism-specific databases

GenoListiBSU20500. [Micado]

Subcellular locationi

GO - Cellular componenti

  1. chromosome Source: GO_Central
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 270270SPBc2 prophage-derived DNA ligase-like protein LigBPRO_0000360515Add
BLAST

Proteomic databases

PaxDbiO31917.

Interactioni

Protein-protein interaction databases

STRINGi224308.BSU20500.

Structurei

3D structure databases

ProteinModelPortaliO31917.
SMRiO31917. Positions 3-270.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.Curated

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000049932.
InParanoidiO31917.
KOiK10747.
OMAiLYTRHNN.
OrthoDBiEOG6F2971.
PhylomeDBiO31917.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O31917-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFVSPMLLHS IKEPFNDENY ITELKFDGIR LILSKFDNQI KLYTRHNNEV
60 70 80 90 100
TSKFPELMDL DIPDGTVLDG EVIVAASGGA PDFEAVMERF MSKKSAHNIV
110 120 130 140 150
YCVFDVIYKD GQSIAAKPLT ERKTVLNSLE LDHPNVFVIE GTQGNGLAYF
160 170 180 190 200
NLAKEKNLEG IVIKKANSPY EINKRSHNWL KVINYDYTEV LITGYTKKDI
210 220 230 240 250
KFLLSYPDGT SAGFMEFMPH AERTKFHSMK QVKSESDEYV FIEPILCNVK
260 270
HRFKTKHGKL RIPSFESWRV
Length:270
Mass (Da):31,027
Last modified:January 1, 1998 - v1
Checksum:iA5667596F87E6355
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB13942.1.
RefSeqiNP_389932.1. NC_000964.3.

Genome annotation databases

EnsemblBacteriaiCAB13942; CAB13942; BSU20500.
GeneIDi939992.
KEGGibsu:BSU20500.
PATRICi18975939. VBIBacSub10457_2160.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB13942.1.
RefSeqiNP_389932.1. NC_000964.3.

3D structure databases

ProteinModelPortaliO31917.
SMRiO31917. Positions 3-270.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.BSU20500.

Proteomic databases

PaxDbiO31917.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13942; CAB13942; BSU20500.
GeneIDi939992.
KEGGibsu:BSU20500.
PATRICi18975939. VBIBacSub10457_2160.

Organism-specific databases

GenoListiBSU20500. [Micado]

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000049932.
InParanoidiO31917.
KOiK10747.
OMAiLYTRHNN.
OrthoDBiEOG6F2971.
PhylomeDBiO31917.

Enzyme and pathway databases

BioCyciBSUB:BSU20500-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiLIGB_BACSU
AccessioniPrimary (citable) accession number: O31917
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 1, 1998
Last modified: March 4, 2015
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.