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O31917

- LIGB_BACSU

UniProt

O31917 - LIGB_BACSU

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Protein

SPBc2 prophage-derived DNA ligase-like protein LigB

Gene

ligB

Organism
Bacillus subtilis (strain 168)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei25 – 251N6-AMP-lysine intermediateBy similarity

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA ligase (ATP) activity Source: RefGenome

GO - Biological processi

  1. DNA ligation Source: RefGenome
  2. DNA recombination Source: InterPro
  3. lagging strand elongation Source: RefGenome
  4. nucleotide-excision repair Source: RefGenome
Complete GO annotation...

Keywords - Molecular functioni

Ligase

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciBSUB:BSU20500-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
SPBc2 prophage-derived DNA ligase-like protein LigB
Gene namesi
Name:ligB
Synonyms:yoqV
Ordered Locus Names:BSU20500
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001570: Chromosome

Organism-specific databases

GenoListiBSU20500. [Micado]

Subcellular locationi

GO - Cellular componenti

  1. chromosome Source: RefGenome
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 270270SPBc2 prophage-derived DNA ligase-like protein LigBPRO_0000360515Add
BLAST

Proteomic databases

PaxDbiO31917.

Interactioni

Protein-protein interaction databases

STRINGi224308.BSU20500.

Structurei

3D structure databases

ProteinModelPortaliO31917.
SMRiO31917. Positions 3-270.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.Curated

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000049932.
InParanoidiO31917.
KOiK01971.
OMAiLYTRHNN.
OrthoDBiEOG6F2971.
PhylomeDBiO31917.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O31917-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MFVSPMLLHS IKEPFNDENY ITELKFDGIR LILSKFDNQI KLYTRHNNEV
60 70 80 90 100
TSKFPELMDL DIPDGTVLDG EVIVAASGGA PDFEAVMERF MSKKSAHNIV
110 120 130 140 150
YCVFDVIYKD GQSIAAKPLT ERKTVLNSLE LDHPNVFVIE GTQGNGLAYF
160 170 180 190 200
NLAKEKNLEG IVIKKANSPY EINKRSHNWL KVINYDYTEV LITGYTKKDI
210 220 230 240 250
KFLLSYPDGT SAGFMEFMPH AERTKFHSMK QVKSESDEYV FIEPILCNVK
260 270
HRFKTKHGKL RIPSFESWRV
Length:270
Mass (Da):31,027
Last modified:January 1, 1998 - v1
Checksum:iA5667596F87E6355
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL009126 Genomic DNA. Translation: CAB13942.1.
RefSeqiNP_389932.1. NC_000964.3.

Genome annotation databases

EnsemblBacteriaiCAB13942; CAB13942; BSU20500.
GeneIDi939992.
KEGGibsu:BSU20500.
PATRICi18975939. VBIBacSub10457_2160.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL009126 Genomic DNA. Translation: CAB13942.1 .
RefSeqi NP_389932.1. NC_000964.3.

3D structure databases

ProteinModelPortali O31917.
SMRi O31917. Positions 3-270.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 224308.BSU20500.

Proteomic databases

PaxDbi O31917.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAB13942 ; CAB13942 ; BSU20500 .
GeneIDi 939992.
KEGGi bsu:BSU20500.
PATRICi 18975939. VBIBacSub10457_2160.

Organism-specific databases

GenoListi BSU20500. [Micado ]

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000049932.
InParanoidi O31917.
KOi K01971.
OMAi LYTRHNN.
OrthoDBi EOG6F2971.
PhylomeDBi O31917.

Enzyme and pathway databases

BioCyci BSUB:BSU20500-MONOMER.

Family and domain databases

InterProi IPR012310. DNA_ligase_ATP-dep_cent.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiLIGB_BACSU
AccessioniPrimary (citable) accession number: O31917
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 1, 1998
Last modified: October 29, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3