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Protein

Superoxide dismutase-like protein YojM

Gene

yojM

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Zn2+Note: Binds 1 zinc ion per homodimer. The zinc ion is bound between 2 subunits and mediates dimerization.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi71Zinc; shared with dimeric partner; structural1
Metal bindingi86CopperSequence analysis1
Metal bindingi137Zinc; shared with dimeric partner; structural1
Metal bindingi166CopperSequence analysis1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Copper, Metal-binding, Zinc

Enzyme and pathway databases

BioCyciBSUB:BSU19400-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase-like protein YojM
Gene namesi
Name:yojM
Ordered Locus Names:BSU19400
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

  • Cell membrane PROSITE-ProRule annotation; Lipid-anchor PROSITE-ProRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Mutagenesisi88Y → H: Leads to copper binding and enzyme activity; when associated with H-104. 1 Publication1
Mutagenesisi104P → H: Leads to copper binding and enzyme activity; when associated with H-88. 1 Publication1

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 17PROSITE-ProRule annotationAdd BLAST17
ChainiPRO_000003284218 – 196Superoxide dismutase-like protein YojMAdd BLAST179

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi18N-palmitoyl cysteinePROSITE-ProRule annotation1
Lipidationi18S-diacylglycerol cysteinePROSITE-ProRule annotation1
Disulfide bondi93 ↔ 186

Keywords - PTMi

Disulfide bond, Lipoprotein, Palmitate

Proteomic databases

PaxDbiO31851.

Interactioni

Subunit structurei

Monomer, and homodimer. Largely unstructured monomer in solution. Well-ordered homodimer in the crystal.2 Publications

Protein-protein interaction databases

IntActiO31851. 19 interactors.
STRINGi224308.Bsubs1_010100010711.

Structurei

Secondary structure

1196
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi42 – 49Combined sources8
Turni50 – 52Combined sources3
Beta strandi54 – 62Combined sources9
Beta strandi64 – 74Combined sources11
Beta strandi85 – 90Combined sources6
Turni91 – 93Combined sources3
Turni95 – 97Combined sources3
Helixi99 – 101Combined sources3
Beta strandi124 – 129Combined sources6
Beta strandi136 – 142Combined sources7
Beta strandi149 – 152Combined sources4
Beta strandi154 – 157Combined sources4
Beta strandi161 – 168Combined sources8
Beta strandi172 – 174Combined sources3
Turni175 – 179Combined sources5
Beta strandi182 – 189Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1S4IX-ray1.80A/B/C/D22-196[»]
1U3NNMR-A35-196[»]
1XTLX-ray2.00A/B/C/D22-196[»]
1XTMX-ray1.60A/B22-196[»]
DisProtiDP00257.
ProteinModelPortaliO31851.
SMRiO31851.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO31851.

Family & Domainsi

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG2032. LUCA.
HOGENOMiHOG000263448.
InParanoidiO31851.
KOiK04565.
OMAiDVIMNAP.
PhylomeDBiO31851.

Family and domain databases

CDDicd00305. Cu-Zn_Superoxide_Dismutase. 1 hit.
Gene3Di2.60.40.200. 1 hit.
InterProiIPR024134. SOD_Cu/Zn_/chaperone.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PANTHERiPTHR10003. PTHR10003. 1 hit.
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O31851-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHRLLLLMML TALGVAGCGQ KKPPDPPNRV PEKKVVETSA FGHHVQLVNR
60 70 80 90 100
EGKAVGFIEI KESDDEGLDI HISANSLRPG ASLGFHIYEK GSCVRPDFES
110 120 130 140 150
AGGPFNPLNK EHGFNNPMGH HAGDLPNLEV GADGKVDVIM NAPDTSLKKG
160 170 180 190
SKLNILDEDG SAFIIHEQAD DYLTNPSGNS GARIVCGALL GNNEKQ
Length:196
Mass (Da):20,953
Last modified:January 1, 1998 - v1
Checksum:i7C00301A62188306
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF026147 Genomic DNA. Translation: AAC17861.1.
AL009126 Genomic DNA. Translation: CAB13832.1.
PIRiB69907.
RefSeqiNP_389822.1. NC_000964.3.
WP_004399243.1. NZ_JNCM01000036.1.

Genome annotation databases

EnsemblBacteriaiCAB13832; CAB13832; BSU19400.
GeneIDi939502.
KEGGibsu:BSU19400.
PATRICi18975731. VBIBacSub10457_2056.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF026147 Genomic DNA. Translation: AAC17861.1.
AL009126 Genomic DNA. Translation: CAB13832.1.
PIRiB69907.
RefSeqiNP_389822.1. NC_000964.3.
WP_004399243.1. NZ_JNCM01000036.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1S4IX-ray1.80A/B/C/D22-196[»]
1U3NNMR-A35-196[»]
1XTLX-ray2.00A/B/C/D22-196[»]
1XTMX-ray1.60A/B22-196[»]
DisProtiDP00257.
ProteinModelPortaliO31851.
SMRiO31851.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO31851. 19 interactors.
STRINGi224308.Bsubs1_010100010711.

Proteomic databases

PaxDbiO31851.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13832; CAB13832; BSU19400.
GeneIDi939502.
KEGGibsu:BSU19400.
PATRICi18975731. VBIBacSub10457_2056.

Phylogenomic databases

eggNOGiCOG2032. LUCA.
HOGENOMiHOG000263448.
InParanoidiO31851.
KOiK04565.
OMAiDVIMNAP.
PhylomeDBiO31851.

Enzyme and pathway databases

BioCyciBSUB:BSU19400-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO31851.

Family and domain databases

CDDicd00305. Cu-Zn_Superoxide_Dismutase. 1 hit.
Gene3Di2.60.40.200. 1 hit.
InterProiIPR024134. SOD_Cu/Zn_/chaperone.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PANTHERiPTHR10003. PTHR10003. 1 hit.
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYOJM_BACSU
AccessioniPrimary (citable) accession number: O31851
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 11, 2001
Last sequence update: January 1, 1998
Last modified: November 2, 2016
This is version 130 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.