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Protein

Uncharacterized membrane protein YndJ

Gene

yndJ

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU17800-MONOMER.

Protein family/group databases

TCDBi9.B.102.7.5. the yede/yeee (yede/yeee) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized membrane protein YndJ
Gene namesi
Name:yndJ
Ordered Locus Names:BSU17800
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001570: Chromosome

Organism-specific databases

GenoListiBSU17800.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei27 – 4620HelicalSequence AnalysisAdd
BLAST
Transmembranei59 – 7820HelicalSequence AnalysisAdd
BLAST
Transmembranei83 – 10018HelicalSequence AnalysisAdd
BLAST
Transmembranei114 – 13421HelicalSequence AnalysisAdd
BLAST
Transmembranei143 – 16321HelicalSequence AnalysisAdd
BLAST
Transmembranei176 – 19621HelicalSequence AnalysisAdd
BLAST
Transmembranei204 – 22421HelicalSequence AnalysisAdd
BLAST
Transmembranei237 – 25721HelicalSequence AnalysisAdd
BLAST
Transmembranei268 – 28821HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 546546Uncharacterized membrane protein YndJPRO_0000370256Add
BLAST

Proteomic databases

PaxDbiO31813.

Interactioni

Protein-protein interaction databases

STRINGi224308.BSU17800.

Structurei

3D structure databases

ProteinModelPortaliO31813.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG20109.
HOGENOMiHOG000087774.
OMAiLMVTIMF.
OrthoDBiEOG6BCSR9.

Family and domain databases

InterProiIPR025450. YndJ-like.
[Graphical view]
PfamiPF14158. YndJ. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O31813-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRNGIVSAL CFIGFLAAEA PDISVAEALV LLSILFFVPG IFPFVFRQSP
60 70 80 90 100
VRAAQFMENG LIQCYPVAAF FAVLALVTEV GGFALIWWMY TVFNALYAIL
110 120 130 140 150
RLWETKIHRI EETSVLFGLI YLAGGGFWFF AYAAHLQIMQ FGPLIILLTA
160 170 180 190 200
VHFHYSAFLI PIFNGLLGRT IRKHRMLYSW ITWVILLSPL LIALGITYSK
210 220 230 240 250
TLDVIAVSIY MAAIYLHAFL VFTAAFRTKT GTFLIRLSSA VLMITIAFSM
260 270 280 290 300
IYSFGVFRQE VTLTINQMIW IHGFVNAFGV ILPALIGWRI EDAKPFDADS
310 320 330 340 350
VKTFSRIYGK RKIGEEFLAN IQAENNARYS GLVDDMGSLR SKDFSPEKLA
360 370 380 390 400
PLILSFYEQT IEYNIKAKVT WSTWFRPLAI IYEWFSRRIG QIHLSTNPDW
410 420 430 440 450
YRMYSKIKGV HSKKDGRERV RAWIRTNEKN ETIFTALYSV YRSNGEGYMN
460 470 480 490 500
ISLPLPFSSM TGILKPYHHQ EKLVLTSRRR KSRAGDEGIY LQTRAGTCPL
510 520 530 540
PLSETFLIEA VHDNKLTAVH HMWLFGIKFL TVHYSITHIN QPIERT
Length:546
Mass (Da):62,471
Last modified:January 1, 1998 - v1
Checksum:iA47CDC4ABBF64F65
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB13664.1.
PIRiA69890.
RefSeqiNP_389663.1. NC_000964.3.

Genome annotation databases

EnsemblBacteriaiCAB13664; CAB13664; BSU17800.
GeneIDi939575.
KEGGibsu:BSU17800.
PATRICi18975387. VBIBacSub10457_1885.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB13664.1.
PIRiA69890.
RefSeqiNP_389663.1. NC_000964.3.

3D structure databases

ProteinModelPortaliO31813.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.BSU17800.

Protein family/group databases

TCDBi9.B.102.7.5. the yede/yeee (yede/yeee) family.

Proteomic databases

PaxDbiO31813.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13664; CAB13664; BSU17800.
GeneIDi939575.
KEGGibsu:BSU17800.
PATRICi18975387. VBIBacSub10457_1885.

Organism-specific databases

GenoListiBSU17800.

Phylogenomic databases

eggNOGiNOG20109.
HOGENOMiHOG000087774.
OMAiLMVTIMF.
OrthoDBiEOG6BCSR9.

Enzyme and pathway databases

BioCyciBSUB:BSU17800-MONOMER.

Family and domain databases

InterProiIPR025450. YndJ-like.
[Graphical view]
PfamiPF14158. YndJ. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiYNDJ_BACSU
AccessioniPrimary (citable) accession number: O31813
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: January 1, 1998
Last modified: January 7, 2015
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.