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Protein

Spore germination protein YndE

Gene

yndE

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Involved in the germinative response to L-alanine. Could be an amino acid transporter (By similarity).By similarity1 Publication

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Amino-acid transport, Germination, Transport

Enzyme and pathway databases

BioCyciBSUB:BSU17760-MONOMER.

Protein family/group databases

TCDBi2.A.3.9.4. the amino acid-polyamine-organocation (apc) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Spore germination protein YndE
Gene namesi
Name:yndE
Ordered Locus Names:BSU17760
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei8 – 2821HelicalSequence analysisAdd
BLAST
Transmembranei41 – 6121HelicalSequence analysisAdd
BLAST
Transmembranei84 – 10421HelicalSequence analysisAdd
BLAST
Transmembranei113 – 13321HelicalSequence analysisAdd
BLAST
Transmembranei149 – 16921HelicalSequence analysisAdd
BLAST
Transmembranei189 – 20921HelicalSequence analysisAdd
BLAST
Transmembranei218 – 23821HelicalSequence analysisAdd
BLAST
Transmembranei273 – 29321HelicalSequence analysisAdd
BLAST
Transmembranei305 – 32521HelicalSequence analysisAdd
BLAST
Transmembranei335 – 35521HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 363363Spore germination protein YndEPRO_0000360156Add
BLAST

Proteomic databases

PaxDbiO31809.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100009786.

Structurei

3D structure databases

ProteinModelPortaliO31809.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108Q8B. Bacteria.
ENOG4110XW1. LUCA.
HOGENOMiHOG000009099.
InParanoidiO31809.
KOiK06311.
OMAiVIYILSC.
OrthoDBiEOG679T8H.
PhylomeDBiO31809.

Family and domain databases

InterProiIPR002293. AA/rel_permease1.
IPR004761. Spore_GerAB.
[Graphical view]
PANTHERiPTHR11785. PTHR11785. 1 hit.
PfamiPF03845. Spore_permease. 1 hit.
[Graphical view]
PIRSFiPIRSF006060. AA_transporter. 1 hit.
TIGRFAMsiTIGR00912. 2A0309. 1 hit.

Sequencei

Sequence statusi: Complete.

O31809-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFSPTSKITT AQATIIIINY MLAAGVLTLP RTVTEQTQSP DGWISVLLGG
60 70 80 90 100
VLAVIAGMII AKLSQQYPKE TFYEYSRHIV GKWLGHLISI VFITYFLALG
110 120 130 140 150
AFEVRVMSEI VDFFLLEGTP SWAIIMTVLW IGLYSITQGL DPIARLFEMI
160 170 180 190 200
FPITVIIFLT IALMSLGIFE INNLRPVLGD GIMPVLRGVK TTNLSFTCSE
210 220 230 240 250
IMFILVAFMK KPKNAVKAVV IGTGVVTSFY MITMIMVIGA LSVEGVVTRT
260 270 280 290 300
WPGLDLMRSF EIPGLIFERF ESFLLVIWIM QLFATFIITF YAASLGVSQV
310 320 330 340 350
FKKKPLSCMF GLLPVIYILS CMPKNENDVF ILGDTVSHIA LYIFGALPIL
360
LLVISKWRKR GEK
Length:363
Mass (Da):40,471
Last modified:January 1, 1998 - v1
Checksum:i1F69D5E3EF312EB5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB13660.1.
PIRiE69889.
RefSeqiNP_389659.1. NC_000964.3.
WP_003231622.1. NZ_JNCM01000035.1.

Genome annotation databases

EnsemblBacteriaiCAB13660; CAB13660; BSU17760.
GeneIDi936538.
KEGGibsu:BSU17760.
PATRICi18975377. VBIBacSub10457_1880.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB13660.1.
PIRiE69889.
RefSeqiNP_389659.1. NC_000964.3.
WP_003231622.1. NZ_JNCM01000035.1.

3D structure databases

ProteinModelPortaliO31809.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100009786.

Protein family/group databases

TCDBi2.A.3.9.4. the amino acid-polyamine-organocation (apc) family.

Proteomic databases

PaxDbiO31809.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13660; CAB13660; BSU17760.
GeneIDi936538.
KEGGibsu:BSU17760.
PATRICi18975377. VBIBacSub10457_1880.

Phylogenomic databases

eggNOGiENOG4108Q8B. Bacteria.
ENOG4110XW1. LUCA.
HOGENOMiHOG000009099.
InParanoidiO31809.
KOiK06311.
OMAiVIYILSC.
OrthoDBiEOG679T8H.
PhylomeDBiO31809.

Enzyme and pathway databases

BioCyciBSUB:BSU17760-MONOMER.

Family and domain databases

InterProiIPR002293. AA/rel_permease1.
IPR004761. Spore_GerAB.
[Graphical view]
PANTHERiPTHR11785. PTHR11785. 1 hit.
PfamiPF03845. Spore_permease. 1 hit.
[Graphical view]
PIRSFiPIRSF006060. AA_transporter. 1 hit.
TIGRFAMsiTIGR00912. 2A0309. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.
  2. "Role of ger proteins in nutrient and nonnutrient triggering of spore germination in Bacillus subtilis."
    Paidhungat M., Setlow P.
    J. Bacteriol. 182:2513-2519(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION IN GERMINATION.

Entry informationi

Entry nameiYNDE_BACSU
AccessioniPrimary (citable) accession number: O31809
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 1, 1998
Last modified: June 8, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.