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Protein

Uncharacterized protein YncM

Gene

yncM

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU17690-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YncM
Gene namesi
Name:yncM
Ordered Locus Names:BSU17690
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001570 Componenti: Chromosome

Organism-specific databases

GenoListiBSU17690.

Subcellular locationi

  • Secreted 1 Publication

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 47471 PublicationAdd
BLAST
Chaini48 – 250203Uncharacterized protein YncMPRO_0000049646Add
BLAST

Proteomic databases

PaxDbiO31803.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100009736.

Structurei

Secondary structure

1
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi54 – 618Combined sources
Beta strandi66 – 738Combined sources
Beta strandi82 – 843Combined sources
Beta strandi86 – 9510Combined sources
Beta strandi100 – 1089Combined sources
Turni109 – 1124Combined sources
Beta strandi113 – 1208Combined sources
Beta strandi127 – 1304Combined sources
Helixi132 – 1354Combined sources
Beta strandi146 – 15510Combined sources
Beta strandi158 – 16710Combined sources
Beta strandi172 – 1798Combined sources
Beta strandi187 – 19711Combined sources
Helixi201 – 2066Combined sources
Beta strandi209 – 22012Combined sources
Beta strandi228 – 23912Combined sources
Beta strandi244 – 2507Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4HFSX-ray1.55A/B40-250[»]
ProteinModelPortaliO31803.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To B.subtilis YrpD.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiNOG134349.
HOGENOMiHOG000008839.
OMAiMTIYKNL.

Family and domain databases

InterProiIPR029143. YrpD.
[Graphical view]
PfamiPF15493. YrpD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O31803-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKPLSKGGI LVKKVLIAGA VGTAVLFGTL SSGIPGLPAA DAQVAKAASE
60 70 80 90 100
LPNGIGGRVY LNSTGAVFTA KIVLPETVKN NDSVSTPYIY SGFRATSGTE
110 120 130 140 150
ADIGLQYSKQ YNVWKPLMKV GSKNEETYIE GKDKFTYNKG FRPGSTVQMT
160 170 180 190 200
IYKNLSGNTR MTLWGTNNDG YTGRIITEIQ GTNIGTISKW KTLATAAVSY
210 220 230 240 250
ESQRDAIKAT FSTSFNNITI DNKAVTPVVD TQDFAKVSVA GNNVTISVNK
Length:250
Mass (Da):26,597
Last modified:January 1, 1998 - v1
Checksum:iC2DA923F71AF33DE
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti54 – 552GI → CD AA sequence (PubMed:10658653).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB13653.1.
PIRiA69889.
RefSeqiNP_389652.1. NC_000964.3.
WP_010886517.1. NC_000964.3.

Genome annotation databases

EnsemblBacteriaiCAB13653; CAB13653; BSU17690.
GeneIDi939576.
KEGGibsu:BSU17690.
PATRICi18975361. VBIBacSub10457_1872.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB13653.1.
PIRiA69889.
RefSeqiNP_389652.1. NC_000964.3.
WP_010886517.1. NC_000964.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4HFSX-ray1.55A/B40-250[»]
ProteinModelPortaliO31803.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100009736.

Proteomic databases

PaxDbiO31803.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13653; CAB13653; BSU17690.
GeneIDi939576.
KEGGibsu:BSU17690.
PATRICi18975361. VBIBacSub10457_1872.

Organism-specific databases

GenoListiBSU17690.

Phylogenomic databases

eggNOGiNOG134349.
HOGENOMiHOG000008839.
OMAiMTIYKNL.

Enzyme and pathway databases

BioCyciBSUB:BSU17690-MONOMER.

Family and domain databases

InterProiIPR029143. YrpD.
[Graphical view]
PfamiPF15493. YrpD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.
  2. "Proteome analysis of Bacillus subtilis extracellular proteins: a two-dimensional protein electrophoretic study."
    Hirose I., Sano K., Shioda I., Kumano M., Nakamura K., Yamane K.
    Microbiology 146:65-75(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 48-58, SUBCELLULAR LOCATION.
    Strain: 168.

Entry informationi

Entry nameiYNCM_BACSU
AccessioniPrimary (citable) accession number: O31803
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: January 1, 1998
Last modified: June 24, 2015
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.