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Protein

Uncharacterized protein YncM

Gene

yncM

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU17690-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YncM
Gene namesi
Name:yncM
Ordered Locus Names:BSU17690
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

  • Secreted 1 Publication

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 471 PublicationAdd BLAST47
ChainiPRO_000004964648 – 250Uncharacterized protein YncMAdd BLAST203

Proteomic databases

PaxDbiO31803.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100009736.

Structurei

Secondary structure

1250
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi54 – 61Combined sources8
Beta strandi66 – 73Combined sources8
Beta strandi82 – 84Combined sources3
Beta strandi86 – 95Combined sources10
Beta strandi100 – 108Combined sources9
Turni109 – 112Combined sources4
Beta strandi113 – 120Combined sources8
Beta strandi127 – 130Combined sources4
Helixi132 – 135Combined sources4
Beta strandi146 – 155Combined sources10
Beta strandi158 – 167Combined sources10
Beta strandi172 – 179Combined sources8
Beta strandi187 – 197Combined sources11
Helixi201 – 206Combined sources6
Beta strandi209 – 220Combined sources12
Beta strandi228 – 239Combined sources12
Beta strandi244 – 250Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4HFSX-ray1.55A/B40-250[»]
ProteinModelPortaliO31803.
SMRiO31803.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To B.subtilis YrpD.Curated

Keywords - Domaini

Signal

Phylogenomic databases

HOGENOMiHOG000008839.
OMAiMTIYKNL.

Family and domain databases

CDDicd13427. YncM_like. 1 hit.
InterProiIPR029143. YrpD.
[Graphical view]
PfamiPF15493. YrpD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O31803-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKPLSKGGI LVKKVLIAGA VGTAVLFGTL SSGIPGLPAA DAQVAKAASE
60 70 80 90 100
LPNGIGGRVY LNSTGAVFTA KIVLPETVKN NDSVSTPYIY SGFRATSGTE
110 120 130 140 150
ADIGLQYSKQ YNVWKPLMKV GSKNEETYIE GKDKFTYNKG FRPGSTVQMT
160 170 180 190 200
IYKNLSGNTR MTLWGTNNDG YTGRIITEIQ GTNIGTISKW KTLATAAVSY
210 220 230 240 250
ESQRDAIKAT FSTSFNNITI DNKAVTPVVD TQDFAKVSVA GNNVTISVNK
Length:250
Mass (Da):26,597
Last modified:January 1, 1998 - v1
Checksum:iC2DA923F71AF33DE
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti54 – 55GI → CD AA sequence (PubMed:10658653).Curated2

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB13653.1.
PIRiA69889.
RefSeqiNP_389652.1. NC_000964.3.
WP_010886517.1. NC_000964.3.

Genome annotation databases

EnsemblBacteriaiCAB13653; CAB13653; BSU17690.
GeneIDi939576.
KEGGibsu:BSU17690.
PATRICi18975361. VBIBacSub10457_1872.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB13653.1.
PIRiA69889.
RefSeqiNP_389652.1. NC_000964.3.
WP_010886517.1. NC_000964.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4HFSX-ray1.55A/B40-250[»]
ProteinModelPortaliO31803.
SMRiO31803.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100009736.

Proteomic databases

PaxDbiO31803.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13653; CAB13653; BSU17690.
GeneIDi939576.
KEGGibsu:BSU17690.
PATRICi18975361. VBIBacSub10457_1872.

Phylogenomic databases

HOGENOMiHOG000008839.
OMAiMTIYKNL.

Enzyme and pathway databases

BioCyciBSUB:BSU17690-MONOMER.

Family and domain databases

CDDicd13427. YncM_like. 1 hit.
InterProiIPR029143. YrpD.
[Graphical view]
PfamiPF15493. YrpD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYNCM_BACSU
AccessioniPrimary (citable) accession number: O31803
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: January 1, 1998
Last modified: November 2, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.