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Protein

Uncharacterized protein YmcA

Gene

ymcA

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

May work together with YlbF to regulate community development.1 Publication

Enzyme and pathway databases

BioCyciBSUB:BSU17020-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YmcA
Gene namesi
Name:ymcA
Ordered Locus Names:BSU17020
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 143143Uncharacterized protein YmcAPRO_0000049633Add
BLAST

Proteomic databases

PaxDbiO31779.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100009361.

Structurei

Secondary structure

1
143
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi6 – 2015Combined sources
Helixi24 – 3815Combined sources
Helixi40 – 6122Combined sources
Helixi65 – 8420Combined sources
Helixi86 – 12035Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2PIHX-ray2.10A/B1-143[»]
ProteinModelPortaliO31779.
SMRiO31779. Positions 2-124.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO31779.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG4550. LUCA.
HOGENOMiHOG000011010.
OMAiINELLQM.
OrthoDBiEOG6Q2SMG.
PhylomeDBiO31779.

Family and domain databases

Gene3Di1.20.1500.10. 1 hit.
InterProiIPR016783. Biofilm_formation_YmcA.
IPR010368. Com_YlbF.
IPR023378. YheA/YmcA-like_dom.
[Graphical view]
PfamiPF06133. Com_YlbF. 1 hit.
[Graphical view]
PIRSFiPIRSF021287. Biofilm_formation_YmcA. 1 hit.
SUPFAMiSSF158622. SSF158622. 1 hit.

Sequencei

Sequence statusi: Complete.

O31779-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTLYSKKDIV QQARNLAKMI SETEEVDFFK RAEAQINEND KVSTIVNQIK
60 70 80 90 100
ALQKQAVNLK HYEKHEALKQ VEAKIDALQE ELEEIPVIQE FRDSQMEVND
110 120 130 140
LLQLVAHTIS NQVTNEIITS TGGDLLKGET GSKVKHSNNS CSL
Length:143
Mass (Da):16,166
Last modified:January 1, 1998 - v1
Checksum:i750A24D99B463C25
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB13575.1.
PIRiC69884.
RefSeqiNP_389584.1. NC_000964.3.
WP_003231834.1. NZ_JNCM01000035.1.

Genome annotation databases

EnsemblBacteriaiCAB13575; CAB13575; BSU17020.
GeneIDi11239555.
939581.
KEGGibsu:BSU17020.
PATRICi18975211. VBIBacSub10457_1797.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB13575.1.
PIRiC69884.
RefSeqiNP_389584.1. NC_000964.3.
WP_003231834.1. NZ_JNCM01000035.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2PIHX-ray2.10A/B1-143[»]
ProteinModelPortaliO31779.
SMRiO31779. Positions 2-124.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100009361.

Proteomic databases

PaxDbiO31779.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13575; CAB13575; BSU17020.
GeneIDi11239555.
939581.
KEGGibsu:BSU17020.
PATRICi18975211. VBIBacSub10457_1797.

Phylogenomic databases

eggNOGiCOG4550. LUCA.
HOGENOMiHOG000011010.
OMAiINELLQM.
OrthoDBiEOG6Q2SMG.
PhylomeDBiO31779.

Enzyme and pathway databases

BioCyciBSUB:BSU17020-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO31779.

Family and domain databases

Gene3Di1.20.1500.10. 1 hit.
InterProiIPR016783. Biofilm_formation_YmcA.
IPR010368. Com_YlbF.
IPR023378. YheA/YmcA-like_dom.
[Graphical view]
PfamiPF06133. Com_YlbF. 1 hit.
[Graphical view]
PIRSFiPIRSF021287. Biofilm_formation_YmcA. 1 hit.
SUPFAMiSSF158622. SSF158622. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.
  2. "Genes involved in formation of structured multicellular communities by Bacillus subtilis."
    Branda S.S., Gonzalez-Pastor J.E., Dervyn E., Ehrlich S.D., Losick R., Kolter R.
    J. Bacteriol. 186:3970-3979(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: ROLE IN FORMATION OF BIOFILMS.
    Strain: 168 and 3610.
  3. "Crystal structure of protein ymcA from Bacillus subtilis."
    Northeast structural genomics consortium (NESG)
    Submitted (MAY-2007) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.1 ANGSTROMS).

Entry informationi

Entry nameiYMCA_BACSU
AccessioniPrimary (citable) accession number: O31779
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 2005
Last sequence update: January 1, 1998
Last modified: February 17, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.