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O31727 (YLME_BACSU) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 72. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
UPF0001 protein ylmE
Gene names
Name:ylmE
Ordered Locus Names:BSU15380
OrganismBacillus subtilis
Taxonomic identifier1423 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus

Protein attributes

Sequence length230 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity.

Sequence similarities

Belongs to the UPF0001 family.

Ontologies

Keywords
   LigandPyridoxal phosphate
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Molecular functionpyridoxal phosphate binding

Inferred from sequence or structural similarity. Source: RefGenome

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 230230UPF0001 protein ylmE
PRO_0000163190

Amino acid modifications

Modified residue351N6-(pyridoxal phosphate)lysine By similarity

Sequences

Sequence LengthMass (Da)Tools
O31727 [UniParc].

Last modified January 1, 1998. Version 1.
Checksum: 3E6F4E28FE771430

FASTA23025,704
        10         20         30         40         50         60 
MRVVDNLRHI NERINEACNR SGRSSDEVTV IAVTKYVSPE RAQEAVDAGI TCLGENRDAE 

        70         80         90        100        110        120 
LLRKQELMKG NPEWHFIGSL QSRKAKSVVN SVSYIHSLDR LSLAKEIEKR AEGTVRCFVQ 

       130        140        150        160        170        180 
VNTSLEPSKH GMKKEEVIPF IQELSGFEHI LVAGLMTMAP LTDDQDQIRS CFRSLRELRD 

       190        200        210        220        230 
QVQKLNQPNA PCTELSMGMS NDFEIAIEEG ATYIRIGSSL VGNETGGVQQ

« Hide

References

[1]"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. expand/collapse author list , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
Nature 390:249-256(1997) [PubMed: 9384377] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 168.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AL009126 Genomic DNA. Translation: CAB13412.1.
PIRE69876.
RefSeqNP_389421.1. NC_000964.3.

3D structure databases

ProteinModelPortalO31727.
SMRO31727. Positions 2-221.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBBACT00000000585; EBBACP00000000585; EBBACG00000000583.
GeneID940117.
GenomeReviewsGene locus BSU15380 in contig AL009126_GR.
KEGGbsu:BSU15380.
NMPDRfig|224308.1.peg.1540.
PATRIC18974881. VBIBacSub10457_1632.

Organism-specific databases

GenoListBSU15380.

Phylogenomic databases

GeneTreeEBGT00050000001616.
HOGENOMHBG289671.
OMARIVAVTK.
PhylomeDBO31727.
ProtClustDBCLSK887274.

Enzyme and pathway databases

BioCycBSUB:BSU15380-MONOMER.

Family and domain databases

InterProIPR001608. Ala_racemase_N.
IPR011078. UPF0001.
[Graphical view]
KOK06997.
PANTHERPTHR10146. PP_YBL036C. 1 hit.
PfamPF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PIRSFPIRSF004848. YBL036c_PLPDEIII. 1 hit.
TIGRFAMsTIGR00044. TIGR00044. 1 hit.
PROSITEPS01211. UPF0001. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYLME_BACSU
AccessionPrimary (citable) accession number: O31727
Entry history
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: January 1, 1998
Last modified: January 25, 2012
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Uncharacterized protein families (UPF)

List of uncharacterized protein family (UPF) entries

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents