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Protein

Putative dipeptidase YkvY

Gene

ykvY

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Cofactori

Mn2+CuratedNote: Binds 2 manganese ions per subunit.Curated

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi222 – 2221Manganese 2Sequence analysis
Metal bindingi233 – 2331Manganese 1Sequence analysis
Metal bindingi233 – 2331Manganese 2Sequence analysis
Metal bindingi297 – 2971Manganese 1Sequence analysis
Metal bindingi326 – 3261Manganese 1Sequence analysis
Metal bindingi340 – 3401Manganese 1Sequence analysis
Metal bindingi340 – 3401Manganese 2Sequence analysis

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Dipeptidase, Hydrolase, Metalloprotease, Protease

Keywords - Ligandi

Manganese, Metal-binding

Enzyme and pathway databases

BioCyciBSUB:BSU13860-MONOMER.

Protein family/group databases

MEROPSiM24.006.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative dipeptidase YkvY (EC:3.4.13.-)
Gene namesi
Name:ykvY
Ordered Locus Names:BSU13860
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 363363Putative dipeptidase YkvYPRO_0000360510Add
BLAST

Proteomic databases

PaxDbiO31689.

Interactioni

Protein-protein interaction databases

IntActiO31689. 1 interaction.
MINTiMINT-8366825.
STRINGi224308.Bsubs1_010100007691.

Structurei

3D structure databases

ProteinModelPortaliO31689.
SMRiO31689. Positions 1-363.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the peptidase M24B family.Curated

Phylogenomic databases

eggNOGiENOG4105DC7. Bacteria.
COG0006. LUCA.
HOGENOMiHOG000008760.
InParanoidiO31689.
KOiK01271.
OMAiITEDGCL.
OrthoDBiEOG618QTW.
PhylomeDBiO31689.

Family and domain databases

Gene3Di3.40.350.10. 1 hit.
3.90.230.10. 1 hit.
InterProiIPR029149. Creatin/AminoP/Spt16_NTD.
IPR028980. Creatinase/Aminopeptidase_P_N.
IPR000587. Creatinase_N.
IPR001714. Pept_M24_MAP.
IPR000994. Pept_M24_structural-domain.
IPR001131. Peptidase_M24B_aminopep-P_CS.
[Graphical view]
PfamiPF01321. Creatinase_N. 1 hit.
PF00557. Peptidase_M24. 1 hit.
[Graphical view]
PRINTSiPR00599. MAPEPTIDASE.
SUPFAMiSSF53092. SSF53092. 1 hit.
SSF55920. SSF55920. 1 hit.
PROSITEiPS00491. PROLINE_PEPTIDASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O31689-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNRIQRVSSW LKEAGHTAAF IHTKENVFYL TGFYTEPHER LMGLFIFQEE
60 70 80 90 100
EPFFVCPGME AGQARNAGWN HEIIGYADHE NPWELIEKAL KKRNISIHML
110 120 130 140 150
AVEKDSISLS RAEQLKHATG GAQFVSAEET LNQFRLIKDD NEIRLLKEAA
160 170 180 190 200
KLADYGVEVG TAALREGISE VEVLAQIEYE LKKKGIQGMS FSTMVLFGEK
210 220 230 240 250
SGQPHGNPGT ATLKKGDFVL FDLGVILDGY CSDITRTFAY KTINPKQEAI
260 270 280 290 300
YETVLQAEKA AIEASKPGVR IGDLDLTARG IIEKAGYGDY FPHRLGHGLG
310 320 330 340 350
ISVHEYPSMS QANDTLLQEG MVYTIEPGIY VPEIGGVRIE DDVHVTKDGA
360
VALTQYPKDL IIL
Length:363
Mass (Da):40,334
Last modified:January 1, 1998 - v1
Checksum:i2410F6E8241C5823
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB13259.1.
PIRiG69869.
RefSeqiNP_389269.1. NC_000964.3.
WP_003244662.1. NZ_JNCM01000035.1.

Genome annotation databases

EnsemblBacteriaiCAB13259; CAB13259; BSU13860.
GeneIDi939258.
KEGGibsu:BSU13860.
PATRICi18974555. VBIBacSub10457_1469.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB13259.1.
PIRiG69869.
RefSeqiNP_389269.1. NC_000964.3.
WP_003244662.1. NZ_JNCM01000035.1.

3D structure databases

ProteinModelPortaliO31689.
SMRiO31689. Positions 1-363.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO31689. 1 interaction.
MINTiMINT-8366825.
STRINGi224308.Bsubs1_010100007691.

Protein family/group databases

MEROPSiM24.006.

Proteomic databases

PaxDbiO31689.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13259; CAB13259; BSU13860.
GeneIDi939258.
KEGGibsu:BSU13860.
PATRICi18974555. VBIBacSub10457_1469.

Phylogenomic databases

eggNOGiENOG4105DC7. Bacteria.
COG0006. LUCA.
HOGENOMiHOG000008760.
InParanoidiO31689.
KOiK01271.
OMAiITEDGCL.
OrthoDBiEOG618QTW.
PhylomeDBiO31689.

Enzyme and pathway databases

BioCyciBSUB:BSU13860-MONOMER.

Family and domain databases

Gene3Di3.40.350.10. 1 hit.
3.90.230.10. 1 hit.
InterProiIPR029149. Creatin/AminoP/Spt16_NTD.
IPR028980. Creatinase/Aminopeptidase_P_N.
IPR000587. Creatinase_N.
IPR001714. Pept_M24_MAP.
IPR000994. Pept_M24_structural-domain.
IPR001131. Peptidase_M24B_aminopep-P_CS.
[Graphical view]
PfamiPF01321. Creatinase_N. 1 hit.
PF00557. Peptidase_M24. 1 hit.
[Graphical view]
PRINTSiPR00599. MAPEPTIDASE.
SUPFAMiSSF53092. SSF53092. 1 hit.
SSF55920. SSF55920. 1 hit.
PROSITEiPS00491. PROLINE_PEPTIDASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiYKVY_BACSU
AccessioniPrimary (citable) accession number: O31689
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 1, 1998
Last modified: February 17, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. Peptidase families
    Classification of peptidase families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.