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Protein

Group 2 truncated hemoglobin YjbI

Gene

yjbI

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Hemoglobin-like protein that exhibits a low peroxidase activity. Its very high oxygen affinity may rule out the possibility that it is involved in oxygen transport.1 Publication

Cofactori

hemeNote: Binds 1 heme group per subunit.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei45Heme1
Binding sitei48Heme1
Binding sitei63Heme1
Metal bindingi76Iron (heme proximal ligand)1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processTransport
LigandHeme, Iron, Metal-binding

Enzyme and pathway databases

BioCyciBSUB:BSU11560-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Group 2 truncated hemoglobin YjbI
Short name:
Truncated Hb
Short name:
trHbO
Alternative name(s):
Hemoglobin-like protein YjbI
Truncated BHb
Gene namesi
Name:yjbI
Ordered Locus Names:BSU11560
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001626471 – 132Group 2 truncated hemoglobin YjbIAdd BLAST132

Proteomic databases

PaxDbiO31607
PRIDEiO31607

Interactioni

Subunit structurei

Monomer.1 Publication

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100006396

Structurei

Secondary structure

1132
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi8 – 11Combined sources4
Helixi13 – 30Combined sources18
Turni32 – 34Combined sources3
Helixi35 – 37Combined sources3
Helixi43 – 56Combined sources14
Helixi62 – 67Combined sources6
Helixi72 – 76Combined sources5
Helixi83 – 100Combined sources18
Helixi105 – 121Combined sources17

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1UX8X-ray2.15A1-132[»]
ProteinModelPortaliO31607
SMRiO31607
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO31607

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108Z18 Bacteria
COG2346 LUCA
HOGENOMiHOG000262697
InParanoidiO31607
KOiK06886
OMAiQYWGGPT
PhylomeDBiO31607

Family and domain databases

Gene3Di1.10.490.10, 1 hit
InterProiView protein in InterPro
IPR009050 Globin-like_sf
IPR012292 Globin/Proto
IPR019795 Globin_bac-like_CS
IPR001486 Hemoglobin_trunc
PfamiView protein in Pfam
PF01152 Bac_globin, 1 hit
SUPFAMiSSF46458 SSF46458, 1 hit
PROSITEiView protein in PROSITE
PS01213 GLOBIN_FAM_2, 1 hit

Sequencei

Sequence statusi: Complete.

O31607-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGQSFNAPYE AIGEELLSQL VDTFYERVAS HPLLKPIFPS DLTETARKQK
60 70 80 90 100
QFLTQYLGGP PLYTEEHGHP MLRARHLPFP ITNERADAWL SCMKDAMDHV
110 120 130
GLEGEIREFL FGRLELTARH MVNQTEAEDR SS
Length:132
Mass (Da):15,116
Last modified:January 1, 1998 - v1
Checksum:i61B970CF4CCD52A1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA Translation: CAB13013.1
PIRiA69844
RefSeqiNP_389038.1, NC_000964.3
WP_003232928.1, NZ_JNCM01000035.1

Genome annotation databases

EnsemblBacteriaiCAB13013; CAB13013; BSU11560
GeneIDi936416
KEGGibsu:BSU11560
PATRICifig|224308.179.peg.1245

Similar proteinsi

Entry informationi

Entry nameiTRHBO_BACSU
AccessioniPrimary (citable) accession number: O31607
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 13, 2005
Last sequence update: January 1, 1998
Last modified: May 23, 2018
This is version 103 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

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