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Protein

Group 2 truncated hemoglobin YjbI

Gene

yjbI

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Hemoglobin-like protein that exhibits a low peroxidase activity. Its very high oxygen affinity may rule out the possibility that it is involved in oxygen transport.1 Publication

Cofactori

hemeNote: Binds 1 heme group per subunit.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei45 – 451Heme
Binding sitei48 – 481Heme
Binding sitei63 – 631Heme
Metal bindingi76 – 761Iron (heme proximal ligand)

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Keywords - Ligandi

Heme, Iron, Metal-binding

Enzyme and pathway databases

BioCyciBSUB:BSU11560-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Group 2 truncated hemoglobin YjbI
Short name:
Truncated Hb
Short name:
trHbO
Alternative name(s):
Hemoglobin-like protein YjbI
Truncated BHb
Gene namesi
Name:yjbI
Ordered Locus Names:BSU11560
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 132132Group 2 truncated hemoglobin YjbIPRO_0000162647Add
BLAST

Proteomic databases

PaxDbiO31607.

Interactioni

Subunit structurei

Monomer.1 Publication

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100006396.

Structurei

Secondary structure

1
132
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi8 – 114Combined sources
Helixi13 – 3018Combined sources
Turni32 – 343Combined sources
Helixi35 – 373Combined sources
Helixi43 – 5614Combined sources
Helixi62 – 676Combined sources
Helixi72 – 765Combined sources
Helixi83 – 10018Combined sources
Helixi105 – 12117Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1UX8X-ray2.15A1-132[»]
ProteinModelPortaliO31607.
SMRiO31607. Positions 6-123.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO31607.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108Z18. Bacteria.
COG2346. LUCA.
HOGENOMiHOG000262697.
InParanoidiO31607.
KOiK06886.
OMAiCMALAMQ.
OrthoDBiEOG6384M2.
PhylomeDBiO31607.

Family and domain databases

Gene3Di1.10.490.10. 1 hit.
InterProiIPR009050. Globin-like.
IPR012292. Globin/Proto.
IPR019795. Globin_bac-like_CS.
IPR001486. Hemoglobin_trunc.
[Graphical view]
PfamiPF01152. Bac_globin. 1 hit.
[Graphical view]
SUPFAMiSSF46458. SSF46458. 1 hit.
PROSITEiPS01213. GLOBIN_FAM_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O31607-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGQSFNAPYE AIGEELLSQL VDTFYERVAS HPLLKPIFPS DLTETARKQK
60 70 80 90 100
QFLTQYLGGP PLYTEEHGHP MLRARHLPFP ITNERADAWL SCMKDAMDHV
110 120 130
GLEGEIREFL FGRLELTARH MVNQTEAEDR SS
Length:132
Mass (Da):15,116
Last modified:January 1, 1998 - v1
Checksum:i61B970CF4CCD52A1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB13013.1.
PIRiA69844.
RefSeqiNP_389038.1. NC_000964.3.
WP_003232928.1. NZ_JNCM01000035.1.

Genome annotation databases

EnsemblBacteriaiCAB13013; CAB13013; BSU11560.
GeneIDi936416.
KEGGibsu:BSU11560.
PATRICi18974029. VBIBacSub10457_1208.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL009126 Genomic DNA. Translation: CAB13013.1.
PIRiA69844.
RefSeqiNP_389038.1. NC_000964.3.
WP_003232928.1. NZ_JNCM01000035.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1UX8X-ray2.15A1-132[»]
ProteinModelPortaliO31607.
SMRiO31607. Positions 6-123.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100006396.

Proteomic databases

PaxDbiO31607.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13013; CAB13013; BSU11560.
GeneIDi936416.
KEGGibsu:BSU11560.
PATRICi18974029. VBIBacSub10457_1208.

Phylogenomic databases

eggNOGiENOG4108Z18. Bacteria.
COG2346. LUCA.
HOGENOMiHOG000262697.
InParanoidiO31607.
KOiK06886.
OMAiCMALAMQ.
OrthoDBiEOG6384M2.
PhylomeDBiO31607.

Enzyme and pathway databases

BioCyciBSUB:BSU11560-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO31607.

Family and domain databases

Gene3Di1.10.490.10. 1 hit.
InterProiIPR009050. Globin-like.
IPR012292. Globin/Proto.
IPR019795. Globin_bac-like_CS.
IPR001486. Hemoglobin_trunc.
[Graphical view]
PfamiPF01152. Bac_globin. 1 hit.
[Graphical view]
SUPFAMiSSF46458. SSF46458. 1 hit.
PROSITEiPS01213. GLOBIN_FAM_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.
  2. "Open reading frame yjbI of Bacillus subtilis codes for truncated hemoglobin."
    Choudhary M.L., Jawaid S., Ahuja M.K., Shiva N.K., Gupta P., Bhuyan A.K., Khatri G.S.
    Protein Expr. Purif. 41:363-372(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: CHARACTERIZATION AS A HEME PROTEIN, FUNCTION AS A PEROXIDASE, SUBUNIT.
  3. "The truncated oxygen-avid hemoglobin from Bacillus subtilis: X-ray structure and ligand binding properties."
    Giangiacomo L., Ilari A., Boffi A., Morea V., Chiancone E.
    J. Biol. Chem. 280:9192-9202(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.15 ANGSTROMS) OF COMPLEX WITH HEME.

Entry informationi

Entry nameiTRHBO_BACSU
AccessioniPrimary (citable) accession number: O31607
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 13, 2005
Last sequence update: January 1, 1998
Last modified: February 17, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.